Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1077
         (643 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    24   1.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   1.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.5  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   4.4  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 NTKTNNPQQLSLYSSRLKYFEDNYEYEVQKSIPIY 18
           N   NN ++L   + R  Y+  NY  ++   +PIY
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNINYIEQIPIPVPIY 124


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 362 RQVPMVRKKIEQKMAEIKKDFHTDVEKRLAGVT 460
           ++ P +RK + +KM ++        E+R+ GVT
Sbjct: 363 KERPKLRKDMYEKMVQVDPTAPNAEERRVQGVT 395


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 362 RQVPMVRKKIEQKMAEIKKDFHTDVEKRLAGVT 460
           ++ P +RK + +KM ++        E+R+ GVT
Sbjct: 278 KERPKLRKDMYEKMVQVDPTAPNAEERRVQGVT 310


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 362 RQVPMVRKKIEQKMAEIKKDFHTDVEKRLAGVT 460
           ++ P +RK + +KM ++        E+R+ GVT
Sbjct: 597 KERPKLRKDMYEKMVQVDPTAPNAEERRVQGVT 629


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 NTKTNNPQQLSLYSSRLKYFEDNYEYEVQKSIPIY 18
           N   NN ++L   + +  Y+  NY  ++   +PIY
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 NTKTNNPQQLSLYSSRLKYFEDNYEYEVQKSIPIY 18
           N   NN ++L   + +  Y+  NY  ++   +PIY
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIY 124


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 529 EFRGL*LEEWCSIWCSLPLV 588
           E R L   +WC +W SL ++
Sbjct: 109 ENRWLFTTDWCDVWRSLDVL 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,247
Number of Sequences: 438
Number of extensions: 3618
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)