Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1076
(580 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 208 2e-54
SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0) 102 2e-22
SB_57454| Best HMM Match : DUF924 (HMM E-Value=1) 95 5e-20
SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086) 66 3e-11
SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6) 52 4e-07
SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8) 48 4e-06
SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 1e-05
SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15) 45 5e-05
SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_8111| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 531
Score = 208 bits (508), Expect = 2e-54
Identities = 109/172 (63%), Positives = 127/172 (73%)
Frame = +3
Query: 48 VSLNPIRILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVE 227
VSLNP+ IL R+SSF+GAIAIGDLVKSTLGPKGMDKIL S G+N G ++
Sbjct: 1 VSLNPVSILNQGAEEERAETARLSSFVGAIAIGDLVKSTLGPKGMDKILQSFGQN-GNIQ 59
Query: 228 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 407
VTNDGATILKSIG+DNPAAKILV++SKVQD+EVGDGTTSVTV KL+ K+H
Sbjct: 60 VTNDGATILKSIGIDNPAAKILVELSKVQDDEVGDGTTSVTVLTSELLKEAEKLVSCKIH 119
Query: 408 PQTIIAGWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKIL 563
PQTI+AGWR + AA++AL A+ DH + R DL NIARTTLSSKIL
Sbjct: 120 PQTIVAGWRKSVKAAEKALEAAAVDHSS--DPEKFREDLMNIARTTLSSKIL 169
>SB_52637| Best HMM Match : Cpn60_TCP1 (HMM E-Value=0)
Length = 505
Score = 102 bits (245), Expect = 2e-22
Identities = 60/154 (38%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 290
+ S + A A+ ++K++LGPKGMDK++VS G+V VTNDGATIL + VD+ AK+
Sbjct: 32 KQSHILAARAVASILKTSLGPKGMDKMMVS---PDGEVTVTNDGATILGMMEVDHQIAKL 88
Query: 291 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 470
+V++SK QD E+GDGTT V V +L++ +HP I G+ +A+ A + +
Sbjct: 89 MVELSKSQDNEIGDGTTGVVVLAGALLEHAEQLLDWGIHPIRIADGYELAAKIALEHMDS 148
Query: 471 A--SFDHQKNLNEASLRVDLENIARTTLSSKILS 566
+F K+ E+ ++ A TTL SKI+S
Sbjct: 149 IADNFPVDKDNKESLIQT-----AMTTLGSKIVS 177
>SB_57454| Best HMM Match : DUF924 (HMM E-Value=1)
Length = 144
Score = 94.7 bits (225), Expect = 5e-20
Identities = 50/88 (56%), Positives = 60/88 (68%)
Frame = +3
Query: 300 MSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASF 479
+SKVQD+EVGDGTTSVTV KL+ K+HPQTI+AGWR + AA++AL A+
Sbjct: 2 LSKVQDDEVGDGTTSVTVLASELLKEAEKLVSCKIHPQTIVAGWRKSVKAAEKALEAAAV 61
Query: 480 DHQKNLNEASLRVDLENIARTTLSSKIL 563
DH + R DL NIARTTLSSKIL
Sbjct: 62 DHSS--DPEKFRDDLMNIARTTLSSKIL 87
>SB_25097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 118
Score = 76.6 bits (180), Expect = 1e-14
Identities = 35/73 (47%), Positives = 49/73 (67%)
Frame = +3
Query: 228 VTNDGATILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLH 407
+TNDG IL+ I V +PAAK ++++S+ QDEEVGDGTTSV + +EQ++H
Sbjct: 1 MTNDGNAILREIQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMH 60
Query: 408 PQTIIAGWRIASD 446
P IIA +R+A D
Sbjct: 61 PTQIIAAYRLAMD 73
>SB_22388| Best HMM Match : Extensin_2 (HMM E-Value=0.086)
Length = 724
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/61 (52%), Positives = 46/61 (75%)
Frame = +3
Query: 141 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 320
I D V++TLGP+GMDK++V GR G+ ++NDGATI+ + + +PAAK LVD++K QD
Sbjct: 667 IADAVRTTLGPRGMDKLIVD-GR--GKATISNDGATIINLLDIVHPAAKTLVDIAKSQDA 723
Query: 321 E 323
E
Sbjct: 724 E 724
>SB_25096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 315
Score = 63.7 bits (148), Expect = 1e-10
Identities = 29/62 (46%), Positives = 41/62 (66%)
Frame = +3
Query: 261 IGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIA 440
I V +PAAK ++++S+ QDEEVGDGTTSV + +EQ++HP IIA +R+A
Sbjct: 209 IQVKHPAAKSMIEISRTQDEEVGDGTTSVIILAGEFMSVAEPFLEQQMHPTQIIAAYRLA 268
Query: 441 SD 446
D
Sbjct: 269 MD 270
>SB_49248| Best HMM Match : Cpn60_TCP1 (HMM E-Value=1.6)
Length = 278
Score = 51.6 bits (118), Expect = 4e-07
Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGV----DNP 278
R + G + D V TLGPKG + I+ ++ G ++T DG T+ K+I + N
Sbjct: 69 RAAMLQGVDTLADAVAVTLGPKGKNVIIE---QSFGGPKITKDGVTVAKAIELKDKYQNI 125
Query: 279 AAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 419
A+++ D++ +EE GDGTT+ TV + + +PQ +
Sbjct: 126 GARLVQDVANNTNEEAGDGTTTATVLARSIATEGFLHVSKGANPQEV 172
>SB_4934| Best HMM Match : NAD_binding_2 (HMM E-Value=4.8)
Length = 186
Score = 48.4 bits (110), Expect = 4e-06
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATI 251
RM++ A A+ D ++++LGPKGMDK++ +G V +TNDGATI
Sbjct: 26 RMTNITAAKAVADAIRTSLGPKGMDKMIQG---GNGDVTITNDGATI 69
>SB_3960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 762
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/98 (25%), Positives = 47/98 (47%)
Frame = +3
Query: 267 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 446
+ +P A ++ ++ QD+ GDGTTS + + + LHP+ + G+ +A
Sbjct: 171 IQHPTASLIARVATAQDDITGDGTTSNVMIIGELLKQADLYVSEGLHPRLVTEGFEVAKK 230
Query: 447 AAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKI 560
A + L E + + R L N+A+T+L +K+
Sbjct: 231 KALEVLEEVKVSREMD------RDTLINVAKTSLRTKV 262
>SB_56262| Best HMM Match : Cpn60_TCP1 (HMM E-Value=6.6e-15)
Length = 563
Score = 44.8 bits (101), Expect = 5e-05
Identities = 20/64 (31%), Positives = 39/64 (60%)
Frame = +3
Query: 150 LVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDEEVG 329
++K + GP G+D +L S +SG + +TN G+ IL+S+ + NP +++V+ ++ G
Sbjct: 15 ILKKSFGPNGLDVMLRS---SSGNILITNSGSMILESLTMGNPTERMIVEAARSLSGRTG 71
Query: 330 DGTT 341
G +
Sbjct: 72 SGAS 75
>SB_29096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 41
Score = 27.5 bits (58), Expect = 8.4
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +3
Query: 390 IEQKLHPQTIIAGWRIASD 446
+EQ++HP IIA +R+A D
Sbjct: 12 LEQQMHPTQIIAAYRLAMD 30
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,992,456
Number of Sequences: 59808
Number of extensions: 258613
Number of successful extensions: 521
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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