Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1076
(580 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 179 1e-45
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 116 2e-26
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 107 5e-24
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 98 3e-21
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 90 1e-18
At5g26360.1 68418.m03151 chaperonin, putative similar to SWISS-P... 86 2e-17
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 84 6e-17
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 84 7e-17
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 71 4e-13
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 59 2e-09
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P... 50 1e-06
At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to... 49 2e-06
At5g56500.1 68418.m07051 chaperonin, putative similar to SWISS-P... 48 3e-06
At3g13470.1 68416.m01695 chaperonin, putative similar SWISS-PROT... 48 5e-06
At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta su... 48 5e-06
At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta su... 48 5e-06
At3g13860.1 68416.m01751 chaperonin, putative similar to SWISS-P... 47 8e-06
At5g18820.1 68418.m02236 chaperonin, putative similar to SWISS-P... 46 2e-05
At1g26230.1 68414.m03200 chaperonin, putative similar to SWISS-P... 43 1e-04
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 43 2e-04
At4g02920.2 68417.m00396 expressed protein 27 6.8
At4g02920.1 68417.m00395 expressed protein 27 6.8
At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transfera... 27 6.8
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 179 bits (435), Expect = 1e-45
Identities = 96/167 (57%), Positives = 116/167 (69%)
Frame = +3
Query: 66 RILKNXXXXXXXXXXRMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGA 245
+I K+ RM+SF+GA+AI DLVKSTLGPKGMDKIL S GR V VTNDGA
Sbjct: 5 KIFKDDASEEKGERARMASFVGAMAISDLVKSTLGPKGMDKILQSTGRGHA-VTVTNDGA 63
Query: 246 TILKSIGVDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIA 425
TILKS+ +DNPAAK+LVD+SKVQD+EVGDGTTSV V KL+ K+HP TIIA
Sbjct: 64 TILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIA 123
Query: 426 GWRIASDAAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILS 566
G+R+AS+ A+ AL + D++ N + R DL IA TTL SKILS
Sbjct: 124 GYRMASECARNALLKRVIDNKDNAEK--FRSDLLKIAMTTLCSKILS 168
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 116 bits (278), Expect = 2e-26
Identities = 60/152 (39%), Positives = 98/152 (64%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 290
R + + A+ ++VK++LGP G+DK+LV + G V +TNDGATIL+ + V++PAAK+
Sbjct: 21 RTQNVMACQAVSNIVKTSLGPVGLDKMLVD---DIGDVTITNDGATILRMLEVEHPAAKV 77
Query: 291 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 470
LV+++++QD EVGDGTTSV + L+ K+HP +II+G+R+A + + + E
Sbjct: 78 LVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEE 137
Query: 471 ASFDHQKNLNEASLRVDLENIARTTLSSKILS 566
+ L +V L N A+T++SSK++S
Sbjct: 138 KLVTKVEKLG----KVPLINCAKTSMSSKLIS 165
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 107 bits (257), Expect = 5e-24
Identities = 60/150 (40%), Positives = 89/150 (59%)
Frame = +3
Query: 114 MSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKIL 293
+S+ A+GD+V++TLGP+GMDK++ + G V ++NDGATI+K + + +PAAKIL
Sbjct: 26 VSNINACTAVGDVVRTTLGPRGMDKLIHD---DKGSVTISNDGATIMKLLDIVHPAAKIL 82
Query: 294 VDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEA 473
VD++K QD EVGDGTT+V + IE +H Q +I +R AS A + E
Sbjct: 83 VDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKEL 142
Query: 474 SFDHQKNLNEASLRVDLENIARTTLSSKIL 563
+ + E + L A TTLSSK++
Sbjct: 143 AVSIEGKSVEEKKGL-LAKCAATTLSSKLI 171
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 98.3 bits (234), Expect = 3e-21
Identities = 54/143 (37%), Positives = 84/143 (58%)
Frame = +3
Query: 138 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQD 317
A+ +++S+LGPKGMDK+L G + +TNDGATIL+ + VDN AK++V++S+ QD
Sbjct: 39 AVARILRSSLGPKGMDKMLQG---PDGDITITNDGATILEQMDVDNQIAKLMVELSRSQD 95
Query: 318 EEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQKNL 497
E+GDGTT V V + +++ +HP I G+ +AS A + L + + ++
Sbjct: 96 YEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASRVAVEHLERIAQKFEFDV 155
Query: 498 NEASLRVDLENIARTTLSSKILS 566
N L TTLSSKI++
Sbjct: 156 NNYE---PLVQTCMTTLSSKIVN 175
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 89.8 bits (213), Expect = 1e-18
Identities = 57/152 (37%), Positives = 82/152 (53%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKI 290
R ++ A A+ D V+++LGPKGMDK++ + +G+V +TNDGATIL + V PAAK+
Sbjct: 30 RFANINSARAVSDAVRTSLGPKGMDKMISTA---NGEVIITNDGATILNKMEVLQPAAKM 86
Query: 291 LVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 470
LV++SK QD GDGTT+V V L+ +HP I A A L
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHPTVISDSLHKACGKAIDILTA 146
Query: 471 ASFDHQKNLNEASLRVDLENIARTTLSSKILS 566
+ E + R L A T+L+SK++S
Sbjct: 147 MAVP-----VELTDRDSLVKSASTSLNSKVVS 173
>At5g26360.1 68418.m03151 chaperonin, putative similar to
SWISS-PROT:P50143- T-complex protein 1, gamma subunit
(TCP-1-gamma) [Xenopus laevis]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 555
Score = 85.8 bits (203), Expect = 2e-17
Identities = 41/94 (43%), Positives = 60/94 (63%)
Frame = +3
Query: 138 AIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQD 317
A+ D++++TLGP+ M K+L+ G G + VTNDG IL+ + V +PAAK ++++S+ QD
Sbjct: 30 AVADIIRTTLGPRSMLKMLLDAG---GGIVVTNDGNAILRELDVAHPAAKSMIELSRTQD 86
Query: 318 EEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTI 419
EEVGDGTTSV V +E+ HP I
Sbjct: 87 EEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 84.2 bits (199), Expect = 6e-17
Identities = 48/143 (33%), Positives = 79/143 (55%)
Frame = +3
Query: 132 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 311
A + D++KS LGPKG K+LV SG +++T DG T+LK + + NP A ++ +
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVG---GSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 312 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 491
QD+ GDGTTS + + I++ +HP+ ++ G+ IA A Q L +F
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL--DTFKTPV 140
Query: 492 NLNEASLRVDLENIARTTLSSKI 560
+ + + L+ +ARTTL +K+
Sbjct: 141 VMGDEPDKEILKMVARTTLRTKL 163
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 83.8 bits (198), Expect = 7e-17
Identities = 48/143 (33%), Positives = 79/143 (55%)
Frame = +3
Query: 132 AIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKV 311
A + D++KS LGPKG K+LV SG +++T DG T+LK + + NP A ++ +
Sbjct: 26 AKGLQDVLKSNLGPKGTIKMLVG---GSGDIKLTKDGNTLLKEMQIQNPTAIMIARTAVA 82
Query: 312 QDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAEASFDHQK 491
QD+ GDGTTS + + I++ +HP+ ++ G+ IA A Q L +F
Sbjct: 83 QDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFL--DNFKTPV 140
Query: 492 NLNEASLRVDLENIARTTLSSKI 560
+ + + L+ +ARTTL +K+
Sbjct: 141 VMGDEVDKEILKMVARTTLRTKL 163
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 71.3 bits (167), Expect = 4e-13
Identities = 37/110 (33%), Positives = 62/110 (56%)
Frame = +3
Query: 141 IGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNPAAKILVDMSKVQDE 320
+ + +++LGP GM+K++++ + ++ VTND ATI+ + + +PAAK+LV +K Q E
Sbjct: 39 LSTITRTSLGPNGMNKMVIN---HLDKLFVTNDAATIVNELEIQHPAAKLLVLAAKAQQE 95
Query: 321 EVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDAAKQALAE 470
E+GDG +LI LHP II+G+ A A + L +
Sbjct: 96 EIGDGANLTISFAGELLQNAEELIRMGLHPSEIISGYTKAVSKAVEILEQ 145
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 59.3 bits (137), Expect = 2e-09
Identities = 34/100 (34%), Positives = 54/100 (54%)
Frame = +3
Query: 267 VDNPAAKILVDMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 446
VDN AK++V++S+ QD E+GDGTT V V + +++ +HP I G+ +AS
Sbjct: 3 VDNQIAKLMVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEGYEMASR 62
Query: 447 AAKQALAEASFDHQKNLNEASLRVDLENIARTTLSSKILS 566
A + L + + ++N L TTLSSKI++
Sbjct: 63 VAVEHLERIAQKFEFDVNNYE---PLVQTCMTTLSSKIVN 99
>At2g33210.1 68415.m04069 chaperonin, putative similar to
SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
precursor (HSP60-2) [Cucurbita maxima]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 585
Score = 49.6 bits (113), Expect = 1e-06
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 4/110 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 296
G + D VK T+GPKG + I+ ++ G +VT DG T+ KSI + N A ++
Sbjct: 50 GVEDLADAVKVTMGPKGRNVIIE---QSWGAPKVTKDGVTVAKSIEFKDRIKNVGASLVK 106
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASD 446
++ ++ GDGTT TV K + ++ + G ++A D
Sbjct: 107 QVANATNDVAGDGTTCATVLTRAIFTEGCKSVAAGMNAMDLRRGIKLAVD 156
>At3g23990.1 68416.m03013 chaperonin (CPN60) (HSP60) identical to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana]
Length = 577
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 4/111 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 296
G + D VK T+GPKG + ++ ++ G +VT DG T+ KSI + N A ++
Sbjct: 49 GVEDLADAVKVTMGPKGRNVVIE---QSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVK 105
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAGWRIASDA 449
++ ++ GDGTT TV K + ++ + G +A DA
Sbjct: 106 QVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDA 156
>At5g56500.1 68418.m07051 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 597
Score = 48.4 bits (110), Expect = 3e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 296
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 70 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 126
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 428
+ ++ GDGTT+ V K++ +P I G
Sbjct: 127 QAASKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVLITRG 170
>At3g13470.1 68416.m01695 chaperonin, putative similar
SWISS-PROT:P21240- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Arabidopsis thaliana]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 596
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 296
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 70 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 126
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 428
+ ++ GDGTT+ V K++ +P I G
Sbjct: 127 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 170
>At1g55490.2 68414.m06348 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 296
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 74 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 130
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 428
+ ++ GDGTT+ V K++ +P I G
Sbjct: 131 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 174
>At1g55490.1 68414.m06347 RuBisCO subunit binding-protein beta
subunit, chloroplast / 60 kDa chaperonin beta subunit /
CPN-60 beta identical to SWISS-PROT:P21240- RuBisCO
subunit binding-protein beta subunit, chloroplast
precursor (60 kDa chaperonin beta subunit, CPN-60 beta)
[Arabidopsis thaliana]
Length = 600
Score = 48.0 bits (109), Expect = 5e-06
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 296
G + DLV TLGPKG + +L S G + NDG T+ + + +++P AK++
Sbjct: 74 GVNKLADLVGVTLGPKGRNVVLES---KYGSPRIVNDGVTVAREVELEDPVENIGAKLVR 130
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 428
+ ++ GDGTT+ V K++ +P I G
Sbjct: 131 QAAAKTNDLAGDGTTTSVVLAQGFIAEGVKVVAAGANPVLITRG 174
>At3g13860.1 68416.m01751 chaperonin, putative similar to
SWISS-PROT:P29197- chaperonin CPN60, mitochondrial
precursor (HSP60) [Arabidopsis thaliana] ; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 572
Score = 47.2 bits (107), Expect = 8e-06
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 111 RMSSFIGAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNP 278
R + G + + VK T+GPKG + I+ S + G ++T DG T+ KSI N
Sbjct: 43 RAAMLQGVSEVAEAVKVTMGPKGRNVIIES---SYGGPKITKDGVTVAKSISFQAKAKNI 99
Query: 279 AAKILVDMSKVQDEEVGDGTTSVTV 353
A+++ ++ ++ GDGTT TV
Sbjct: 100 GAELVKQVASATNKVAGDGTTCATV 124
>At5g18820.1 68418.m02236 chaperonin, putative similar to
SWISS-PROT:P08926- RuBisCO subunit binding-protein alpha
subunit, chloroplast precursor (60 kDa chaperonin alpha
subunit, CPN-60 alpha)[Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 575
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIG----VDNPAAKILV 296
G + D V TLGP+G + +L ++V NDG TI KSI ++N A ++
Sbjct: 51 GIDKLADAVSITLGPRGRNVVLAE----KDTIKVINDGVTIAKSIELPDTIENAGATLIQ 106
Query: 297 DMSKVQDEEVGDGTTSVTV 353
+++ +E GDGTT+ +
Sbjct: 107 EVAIKMNESAGDGTTTAII 125
>At1g26230.1 68414.m03200 chaperonin, putative similar to
SWISS-PROT:P08927- RuBisCO subunit binding-protein beta
subunit, chloroplast precursor (60 kDa chaperonin beta
subunit, CPN-60 beta) [Pisum sativum]; contains
Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
Length = 611
Score = 43.2 bits (97), Expect = 1e-04
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 4/104 (3%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSIGVDNP----AAKILV 296
GA + L+ TLGPKG + +L + G + NDG T+LK I +++P K++
Sbjct: 58 GADMVAKLLGVTLGPKGRNVVLQN---KYGPPRIVNDGETVLKEIELEDPLENVGVKLVR 114
Query: 297 DMSKVQDEEVGDGTTSVTVXXXXXXXXXXKLIEQKLHPQTIIAG 428
++ GDG+T+ + K+I +P + G
Sbjct: 115 QAGAKTNDLAGDGSTTSIILAHGLITEGIKVISAGTNPIQVARG 158
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 42.7 bits (96), Expect = 2e-04
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Frame = +3
Query: 129 GAIAIGDLVKSTLGPKGMDKILVSCGRNSGQVEVTNDGATILKSI----GVDNPAAKILV 296
G + D V TLGP+G + +L G +V NDG TI ++I ++N A ++
Sbjct: 64 GIDKLADCVGLTLGPRGRNVVL----DEFGSPKVVNDGVTIARAIELPNAMENAGAALIR 119
Query: 297 DMSKVQDEEVGDGTTSVTV 353
+++ ++ GDGTT+ ++
Sbjct: 120 EVASKTNDSAGDGTTTASI 138
>At4g02920.2 68417.m00396 expressed protein
Length = 419
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 123 NWTSEQLQLSPLLLHF*GYELDLMIPFWMK 34
N T++ QLSPL+ HF +E D+ P +K
Sbjct: 211 NSTTKWRQLSPLIPHFQRFESDVFTPAKLK 240
>At4g02920.1 68417.m00395 expressed protein
Length = 418
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 123 NWTSEQLQLSPLLLHF*GYELDLMIPFWMK 34
N T++ QLSPL+ HF +E D+ P +K
Sbjct: 210 NSTTKWRQLSPLIPHFQRFESDVFTPAKLK 239
>At1g07240.1 68414.m00770 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 480
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 243 ATILKSI-GVDNPAAKILVDMSKVQDEEVGDGTTS 344
AT ++S+ DNP K +++ S V + VGDG +S
Sbjct: 430 ATAVRSLMDSDNPVRKKVIEKSSVARKAVGDGGSS 464
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,866,655
Number of Sequences: 28952
Number of extensions: 192597
Number of successful extensions: 387
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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