Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1075
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    31   0.13 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   6.3  
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   8.3  
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C...    25   8.3  

>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 407 VLCVAMLYETRSQYKKASDFSESVC 333
           + C+ M+YE    YKKA DF +  C
Sbjct: 536 ITCIGMIYERCKDYKKALDFYDRAC 560


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +1

Query: 340 DSEKSLAFLYWLLVSYNMATHNTGFYRNVFNV 435
           DS++ L+ L+  L++  ++  N+GFY ++ N+
Sbjct: 337 DSKRPLSKLFSNLITKRISLPNSGFYTSLLNL 368


>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 110

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +2

Query: 431 TCYRRVNLYI*CLGNVFFEN----FQY*LHLRI 517
           TC   V +Y  CL N+FF N    F+Y ++L +
Sbjct: 66  TCLGAVVIYAVCLMNIFFRNSENCFKYSMNLSV 98


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 688 HVIKFQLTFLKLFKTEPYLEFCSN 617
           H I ++ + L+LF  +P   FCSN
Sbjct: 331 HAIAYEGSILQLFIKQPVQGFCSN 354


>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
           Cct2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 483 LKIFNINCILGLRVIFFW-QQLWYELVLMNL 572
           +K  NINC +  ++I+ W +QL+ +  +M++
Sbjct: 278 IKSHNINCFINRQLIYNWPEQLFADAGIMSI 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,226
Number of Sequences: 5004
Number of extensions: 60181
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)