Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1074
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    29   0.49 
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    26   6.0  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    26   6.0  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   8.0  

>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +1

Query: 517 ILCKNKSTLSI*VDNKLKQNNETKTVCVLNSITQ*CYINIHLQTS*MYTDSLSSHVL 687
           I C N+  + + ++N  K  N  K VCV++S+T   Y N   Q+      S  SH++
Sbjct: 331 IHCPNELVIDLVIENH-KWTNAPKPVCVIHSVTPEVYKNPRYQSWISSFPSEVSHLI 386


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 667 YRYTFSWFVNEYLYNITELWN*EHKRF 587
           + Y   WF+  Y+Y  +  W+ E K F
Sbjct: 163 FYYLCFWFLGLYIYRSSNYWSNEEKLF 189


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 649 WFVNEYLYNITELWN*EHK 593
           WFVNE + N  E W   HK
Sbjct: 122 WFVNENVLNEFEAWRRTHK 140


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 308 LVLLWMTEFKLYYLRVPVTN 367
           L+L W+ EF+L ++  P +N
Sbjct: 64  LILTWLPEFRLKWIEAPCSN 83


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 571 VLIYCLLILTRWICFCIKSIA*ICFCLTNIYLFFSFICNIH 449
           VL YCL  L  W C  I S   +     ++Y + S  C +H
Sbjct: 301 VLAYCLSQLFNWSCQNISSYQRL-VSFAHLYSYTSVKCLVH 340


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,344
Number of Sequences: 5004
Number of extensions: 57652
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)