Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1074
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr...    29   4.3  
AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical ...    28   5.7  
AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical ...    28   5.7  
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t...    28   7.5  
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t...    28   7.5  
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t...    28   7.5  

>Z54342-5|CAA91147.1|  457|Caenorhabditis elegans Hypothetical
           protein C08H9.10 protein.
          Length = 457

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -1

Query: 625 NITELWN*EHKRFLFHCFVLIYCLLILTRWICFCIKSI 512
           NIT+  N + K F+ HC++LI  +L+L+  I F +  +
Sbjct: 18  NITQKNNRQWKNFIKHCYILI-TILVLSAPIAFSLSKL 54


>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
           protein F48F5.1 protein.
          Length = 1291

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 245 MRSRFPAEQSRQINIFSSFKSE 180
           ++S FPA+ +RQ+  F+ FK E
Sbjct: 294 LKSTFPADNARQVQSFNQFKEE 315


>AF068709-2|AAC19251.2|  429|Caenorhabditis elegans Hypothetical
           protein C24B9.3a protein.
          Length = 429

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 131 ELTYISRWVAHLCC 90
           +LTY+S W+A LCC
Sbjct: 206 QLTYVSAWMAALCC 219


>AF068709-1|AAQ91906.1|  449|Caenorhabditis elegans Hypothetical
           protein C24B9.3b protein.
          Length = 449

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 131 ELTYISRWVAHLCC 90
           +LTY+S W+A LCC
Sbjct: 226 QLTYVSAWMAALCC 239


>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
           type/putative nematodecalcium channel protein 2 protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 HSYTENLLISQDGWRIYVVDVY 80
           H YT+ L   +DGW++  VD Y
Sbjct: 385 HVYTQKLEKDEDGWKLVEVDKY 406


>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1763

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 HSYTENLLISQDGWRIYVVDVY 80
           H YT+ L   +DGW++  VD Y
Sbjct: 363 HVYTQKLEKDEDGWKLVEVDKY 384


>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
           voltage-gatedion channel alpha-1 subunit protein.
          Length = 1785

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 145 HSYTENLLISQDGWRIYVVDVY 80
           H YT+ L   +DGW++  VD Y
Sbjct: 385 HVYTQKLEKDEDGWKLVEVDKY 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,473
Number of Sequences: 27780
Number of extensions: 307380
Number of successful extensions: 643
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)