Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1072
(696 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 180 2e-44
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 63 5e-09
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 62 1e-08
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 59 9e-08
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther... 57 5e-07
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 52 1e-05
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 52 1e-05
UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-direct... 50 4e-05
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 49 1e-04
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 42 0.011
UniRef50_UPI0000EB1BB3 Cluster: Uncharacterized protein KIAA1543... 37 0.41
UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup... 35 1.7
UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-direct... 34 2.9
UniRef50_Q1GPX7 Cluster: Autoinducer synthesis protein; n=1; Sph... 34 2.9
UniRef50_Q6IH44 Cluster: HDC03386; n=1; Drosophila melanogaster|... 33 6.7
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 180 bits (439), Expect = 2e-44
Identities = 95/148 (64%), Positives = 104/148 (70%), Gaps = 9/148 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
P ITL G IPWARKVKYL V LDASMTFR HIK+VRDRAAFILGRLYPMICK SKMSLR
Sbjct: 749 PPITLFGLPIPWARKVKYLGVTLDASMTFRPHIKTVRDRAAFILGRLYPMICKRSKMSLR 808
Query: 370 SKVTLYKLANDP---------S*HTRVWCININTFQLDFCALAVGVPWSFRNVDLRDDLG 522
+KVTLYK P + R + + Q FC LAVG PW RNVDL DDLG
Sbjct: 809 NKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLG 868
Query: 523 LESTRKYLMSTSDRYFDKAMRHDIYLFI 606
LES RK++ S S+RYFDKAMRHD L +
Sbjct: 869 LESIRKHMKSVSERYFDKAMRHDNRLIV 896
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 63.3 bits (147), Expect = 5e-09
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Frame = +1
Query: 217 IPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSKVTLYK-- 390
+P KYL V+LD +TF H+ +R R + + Y ++ SK+SL +K+T+YK
Sbjct: 739 VPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQI 798
Query: 391 LANDPS*HTRVWCI-------NINTFQLDFCALAVGVPWSFRNVDLRDDLGLESTRKYLM 549
LA + ++W + I Q L G W RN L DL L + +
Sbjct: 799 LAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEIN 858
Query: 550 STSDRYFDKAMRH 588
S RY D+ RH
Sbjct: 859 KHSSRYHDRLERH 871
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; n=80;
Culicimorpha|Rep: Reverse transcriptase homolog protein -
Chironomus thummi
Length = 883
Score = 62.1 bits (144), Expect = 1e-08
Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Frame = +1
Query: 103 VMQTSIYWW*GIS*ARTASLTVVNC-SWQLP--LITLLGESIPWARKVKYLVVILDASMT 273
V Q W ++ +T +L + N S QLP I L E+I W + KYL +++D +T
Sbjct: 706 VQQYMNKWKINLNKQKTQALFITNRHSRQLPGNNIKFLNENIKWETEAKYLGMVIDNRVT 765
Query: 274 FRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSKVTLYKLANDP 405
+ H++ V +RA L +LYP+I + ++ +R+K+ +YKLA P
Sbjct: 766 LKPHVEYVTNRAHTALRQLYPLISRNLQLDVRNKLLIYKLAIRP 809
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 59.3 bits (137), Expect = 9e-08
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
+ + IPW+ +VKYL VILD ++F H+ + G L ++C+ S +S+ +K
Sbjct: 1204 VRMFNADIPWSDQVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNK 1263
Query: 376 VTLYKLANDP--S*HTRVWCI--------NINTFQLDFCALAVGVPWSFRNVDLRDDLGL 525
+ LYK P + + W + TFQ F A PW RN L ++ +
Sbjct: 1264 LLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREVKM 1323
Query: 526 ESTRKYLMSTS 558
+ ++ T+
Sbjct: 1324 PTMEEFFRETA 1334
>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
mylitta|Rep: Reverse transcriptase-like - Antheraea
mylitta (Tasar silkworm)
Length = 186
Score = 56.8 bits (131), Expect = 5e-07
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Frame = +1
Query: 316 ILGRLYPMICKGSKMSLRSKVTLYKLANDP---------S*HTRVWCININTFQLDFCAL 468
+LGRL+P++C SKMSLR K+ LYK P + ++ + FQ
Sbjct: 2 VLGRLHPLLCHKSKMSLRHKLILYKTCIRPVITYSCPVFAHMSKDNFHKLQVFQNRVLRK 61
Query: 469 AVGVPWSFRNVDLRDDLGLESTRKYLMSTSDRYFDKAMRH 588
G PW R VDL +L + S Y+ S + YF+KA H
Sbjct: 62 VTGTPWYIRRVDLHRNLEIPSIWTYVKSLTISYFEKAANH 101
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:
ORF1 - Drosophila melanogaster (Fruit fly)
Length = 884
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/70 (31%), Positives = 41/70 (58%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
+ +L I W ++YL +I D +TF+ HI + + I+ LYP+I + SK+S+ +K
Sbjct: 757 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNK 816
Query: 376 VTLYKLANDP 405
+ ++K +P
Sbjct: 817 IIIFKTIFNP 826
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 52.4 bits (120), Expect = 1e-05
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Frame = +1
Query: 124 WW*GIS*ARTASLTVVNCSWQLPLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRD 303
W I+ + A++T N + P ++L G I + KYL + LD +TF HI +++
Sbjct: 713 WNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQ 772
Query: 304 RAAFILGRLYPMICKGSKMSLRSKVTLYKLANDPS*H--TRVWCI-------NINTFQLD 456
+ R+ +I +K+SL KV +YK P +V+ I I Q
Sbjct: 773 AFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAK 832
Query: 457 FCALAVGVPWSFRNVDLRDDLGLESTRKYLMSTSDRYFDKAMRHDIYLFI*ISTATSQTS 636
G PW R D+ DL + L + + +Y ++ H L + TA +
Sbjct: 833 TLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNA 892
Query: 637 D 639
D
Sbjct: 893 D 893
>UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 421
Score = 50.4 bits (115), Expect = 4e-05
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
+ + IPW+ VKYL VILD ++F H+ + G L ++C+ S +S+ +K
Sbjct: 295 VRMFNADIPWSDHVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSLVCRRSALSIDNK 354
Query: 376 VTLYKLANDPS 408
+ LYK P+
Sbjct: 355 LLLYKSVIRPT 365
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 48.8 bits (111), Expect = 1e-04
Identities = 30/136 (22%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
I + ++I W +++KY+ + LD S+T++ H+ + ++ L L ++C+ + ++L +K
Sbjct: 327 ILINNQAIEWIKQIKYMGLTLDTSLTYKTHLINAANKTKSALKSLNSLLCRKTHLNLANK 386
Query: 376 VTLYKLANDP--S*HTRVW-------CININTFQLDFCALAVGVPWSFRNVDLRDDLGLE 528
LY P S + W +I T Q PW RN +L DL +
Sbjct: 387 RLLYLSTLRPILSYASPCWGSAASSNLSHILTVQNKIIRQISNAPWFIRNKNLEKDLKIP 446
Query: 529 STRKYLMSTSDRYFDK 576
+ + ++ + + ++
Sbjct: 447 NLKDFIKKLNQDFANR 462
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 42.3 bits (95), Expect = 0.011
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
I L G + + KYL + LD +TF H+K+ R + +L ++ + S M+LR+K
Sbjct: 738 IELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAK 797
Query: 376 VTLYKLANDP--S*HTRVWCI----NINTFQ-LDFCAL--AVGVPWSFRNVDLRDDLGLE 528
+Y P ++W I N N Q L A+ P+ R L DL L
Sbjct: 798 RAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLH 857
Query: 529 STRKYLMSTSDRYFDKAMRH 588
+ + + + RY D+ RH
Sbjct: 858 TVEEQISRHTSRYSDRLRRH 877
>UniRef50_UPI0000EB1BB3 Cluster: Uncharacterized protein KIAA1543.;
n=1; Canis lupus familiaris|Rep: Uncharacterized protein
KIAA1543. - Canis familiaris
Length = 1279
Score = 37.1 bits (82), Expect = 0.41
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Frame = +3
Query: 168 SQL*LAIAPDHPLR-RINTLGQEGQ----VPGSHPGCIDDIPPAHKICPRPR-RVYSRQT 329
+QL L D LR R G+ GQ PG GC D++ P K CP P +VYS+ T
Sbjct: 1020 AQLKLMEDLDKVLRPRAAGTGEPGQDRRKAPGPRSGCCDELDPGTKPCPWPAGKVYSQST 1079
Query: 330 LS 335
LS
Sbjct: 1080 LS 1081
>UniRef50_Q18LA9 Cluster: Pol protein; n=8; melanogaster subgroup|Rep:
Pol protein - Drosophila melanogaster (Fruit fly)
Length = 1103
Score = 35.1 bits (77), Expect = 1.7
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
PLI G+ K +YL ++LD +TF H+ ++ + +L +I K S +
Sbjct: 795 PLIN--GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKN 852
Query: 370 SKVTLYKLANDPS*H--TRVW--------CININTFQLDFCALAVGVPWSFRNVDLRDDL 519
+K+ L+K P H +W I T + + + R D+R
Sbjct: 853 AKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKY 912
Query: 520 GLESTRKYLMSTSDRYFDKAMRHD 591
++S + S RY + H+
Sbjct: 913 NIKSFDEIFDKASQRYANSLTDHE 936
>UniRef50_UPI0000D5792E Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase), partial; n=1; Tribolium castaneum|Rep:
PREDICTED: similar to RNA-directed DNA polymerase from
mobile element jockey (Reverse transcriptase), partial -
Tribolium castaneum
Length = 830
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMI 342
+ + IPW+ +VKYL VILD ++F H+ + G L ++
Sbjct: 752 VRMFNADIPWSDQVKYLGVILDKKLSFGPHLDYALAKGKMATGMLRSIV 800
>UniRef50_Q1GPX7 Cluster: Autoinducer synthesis protein; n=1;
Sphingopyxis alaskensis|Rep: Autoinducer synthesis
protein - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 208
Score = 34.3 bits (75), Expect = 2.9
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +1
Query: 181 WQLPLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKG 351
W LP++ E + R+ +YL+ +L+ + R + +R +LG LYP +C G
Sbjct: 34 WDLPILANEFEVDQFDRQAEYLI-LLEQGVRHRASTRLLRTDQPHLLGDLYPHLCAG 89
>UniRef50_Q6IH44 Cluster: HDC03386; n=1; Drosophila
melanogaster|Rep: HDC03386 - Drosophila melanogaster
(Fruit fly)
Length = 140
Score = 33.1 bits (72), Expect = 6.7
Identities = 22/68 (32%), Positives = 36/68 (52%)
Frame = +1
Query: 154 ASLTVVNCSWQLPLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLY 333
++L + S + P +TL G++I YL + LD +T+ HI R +A L +L+
Sbjct: 7 SNLKRILVSGECPPVTLDGDTITTTSTPNYLGLTLDRRLTWGPHINRKRIQANIRLKQLH 66
Query: 334 PMICKGSK 357
+I K SK
Sbjct: 67 WLIGKKSK 74
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 712,789,779
Number of Sequences: 1657284
Number of extensions: 14460390
Number of successful extensions: 29209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 28434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29201
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54958682807
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -