Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1072
(696 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 63 3e-10
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 52 6e-07
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 52 6e-07
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 52 6e-07
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 52 6e-07
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 42 6e-04
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 35 0.092
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 35 0.092
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 35 0.092
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 35 0.12
AY061330-1|AAL28878.1| 894|Drosophila melanogaster LD25692p pro... 29 6.0
AE014134-3048|AAF53766.1| 894|Drosophila melanogaster CG10689-P... 29 6.0
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 63.3 bits (147), Expect = 3e-10
Identities = 41/133 (30%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Frame = +1
Query: 217 IPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSKVTLYK-- 390
+P KYL V+LD +TF H+ +R R + + Y ++ SK+SL +K+T+YK
Sbjct: 739 VPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYKQI 798
Query: 391 LANDPS*HTRVWCI-------NINTFQLDFCALAVGVPWSFRNVDLRDDLGLESTRKYLM 549
LA + ++W + I Q L G W RN L DL L + +
Sbjct: 799 LAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKLATVFDEIN 858
Query: 550 STSDRYFDKAMRH 588
S RY D+ RH
Sbjct: 859 KHSSRYHDRLERH 871
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 52.4 bits (120), Expect = 6e-07
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Frame = +1
Query: 124 WW*GIS*ARTASLTVVNCSWQLPLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRD 303
W I+ + A++T N + P ++L G I + KYL + LD +TF HI +++
Sbjct: 713 WNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQ 772
Query: 304 RAAFILGRLYPMICKGSKMSLRSKVTLYKLANDPS*H--TRVWCI-------NINTFQLD 456
+ R+ +I +K+SL KV +YK P +V+ I I Q
Sbjct: 773 AFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAK 832
Query: 457 FCALAVGVPWSFRNVDLRDDLGLESTRKYLMSTSDRYFDKAMRHDIYLFI*ISTATSQTS 636
G PW R D+ DL + L + + +Y ++ H L + TA +
Sbjct: 833 TLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAVVNA 892
Query: 637 D 639
D
Sbjct: 893 D 893
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 52.4 bits (120), Expect = 6e-07
Identities = 22/70 (31%), Positives = 41/70 (58%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
+ +L I W ++YL +I D +TF+ HI + + I+ LYP+I + SK+S+ +K
Sbjct: 757 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNK 816
Query: 376 VTLYKLANDP 405
+ ++K +P
Sbjct: 817 IIIFKTIFNP 826
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p protein.
Length = 718
Score = 52.4 bits (120), Expect = 6e-07
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 9/181 (4%)
Frame = +1
Query: 124 WW*GIS*ARTASLTVVNCSWQLPLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRD 303
W I+ + A++T N + P ++L G I + KYL + LD +TF HI +++
Sbjct: 515 WNVRINAEKCANVTFANRTGSCPGVSLNGRLIRHHQAYKYLGITLDRKLTFSRHITNIQQ 574
Query: 304 RAAFILGRLYPMICKGSKMSLRSKVTLYKLANDPS*H--TRVWCI-------NINTFQLD 456
+ R+ +I +K+SL KV +YK P +V+ I I Q
Sbjct: 575 AFRTKVARMSWLIAPRNKLSLGCKVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAK 634
Query: 457 FCALAVGVPWSFRNVDLRDDLGLESTRKYLMSTSDRYFDKAMRHDIYLFI*ISTATSQTS 636
G PW R D+ DL + L + + +Y ++ H L + TA +
Sbjct: 635 TLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYLERLNVHPNSLARKLGTAAVVNA 694
Query: 637 D 639
D
Sbjct: 695 D 695
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 52.4 bits (120), Expect = 6e-07
Identities = 22/70 (31%), Positives = 41/70 (58%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
+ +L I W ++YL +I D +TF+ HI + + I+ LYP+I + SK+S+ +K
Sbjct: 705 LRILDSPIQWVDNIRYLGIIFDKKLTFKYHINNTIMKVNKIICTLYPLINRKSKLSISNK 764
Query: 376 VTLYKLANDP 405
+ ++K +P
Sbjct: 765 IIIFKTIFNP 774
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 42.3 bits (95), Expect = 6e-04
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Frame = +1
Query: 196 ITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLRSK 375
I L G + + KYL + LD +TF H+K+ R + +L ++ + S M+LR+K
Sbjct: 738 IELEGVILDQPSQAKYLGITLDKRLTFGPHLKATTRRCYQRMQQLRWLLNRKSTMTLRAK 797
Query: 376 VTLYKLANDP--S*HTRVWCI----NINTFQ-LDFCAL--AVGVPWSFRNVDLRDDLGLE 528
+Y P ++W I N N Q L A+ P+ R L DL L
Sbjct: 798 RAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRDLNLH 857
Query: 529 STRKYLMSTSDRYFDKAMRH 588
+ + + + RY D+ RH
Sbjct: 858 TVEEQISRHTSRYSDRLRRH 877
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.092
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
PLI G+ K +YL ++LD +TF H+ ++ + +L +I K S +
Sbjct: 795 PLIN--GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKN 852
Query: 370 SKVTLYKLANDPS*H--TRVW--------CININTFQLDFCALAVGVPWSFRNVDLRDDL 519
+K+ L+K P H +W I T + + + R D+R
Sbjct: 853 AKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKY 912
Query: 520 GLESTRKYLMSTSDRYFDKAMRHD 591
++S + S RY + H+
Sbjct: 913 NIKSFDEIFDKASQRYANSLTDHE 936
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.092
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
PLI G+ K +YL ++LD +TF H+ ++ + +L +I K S +
Sbjct: 795 PLIN--GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKN 852
Query: 370 SKVTLYKLANDPS*H--TRVW--------CININTFQLDFCALAVGVPWSFRNVDLRDDL 519
+K+ L+K P H +W I T + + + R D+R
Sbjct: 853 AKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKY 912
Query: 520 GLESTRKYLMSTSDRYFDKAMRHD 591
++S + S RY + H+
Sbjct: 913 NIKSFDEIFDKASQRYANSLTDHE 936
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 35.1 bits (77), Expect = 0.092
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
PLI G+ K +YL ++LD +TF H+ ++ + +L +I K S +
Sbjct: 795 PLIN--GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKN 852
Query: 370 SKVTLYKLANDPS*H--TRVW--------CININTFQLDFCALAVGVPWSFRNVDLRDDL 519
+K+ L+K P H +W I T + + + R D+R
Sbjct: 853 AKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKY 912
Query: 520 GLESTRKYLMSTSDRYFDKAMRHD 591
++S + S RY + H+
Sbjct: 913 NIKSFDEIFDKASQRYANSLTDHE 936
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 34.7 bits (76), Expect = 0.12
Identities = 32/144 (22%), Positives = 57/144 (39%), Gaps = 10/144 (6%)
Frame = +1
Query: 190 PLITLLGESIPWARKVKYLVVILDASMTFRLHIKSVRDRAAFILGRLYPMICKGSKMSLR 369
PLI G+ K +YL ++LD +TF H+ ++ + +L +I K S +
Sbjct: 348 PLIN--GQRAAKLNKQRYLGLMLDRRLTFCAHMTLLKGKTIAAYKKLEWLIGKNSHLPKN 405
Query: 370 SKVTLYKLANDPS*H--TRVW--------CININTFQLDFCALAVGVPWSFRNVDLRDDL 519
+K+ L+K P H +W I T + + + R D+R
Sbjct: 406 AKILLWKQIVSPIWHYAIAIWGSLVSDTQAKKIQTMENKYIRRIINASRYTRQADIRTKY 465
Query: 520 GLESTRKYLMSTSDRYFDKAMRHD 591
++S + S RY + H+
Sbjct: 466 NIKSFDETFDKASQRYANSLTDHE 489
>AY061330-1|AAL28878.1| 894|Drosophila melanogaster LD25692p
protein.
Length = 894
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 186 LPTTVDYCQTSRAGSRYALPPVNAGLHYYYLTVRYNQNAAARPN 55
LP TV+ + + AG Y + ++ G HY T+++NQ PN
Sbjct: 786 LPETVNVRKAATAGYFYHVARLSKGGHYK--TIKHNQTVMIHPN 827
>AE014134-3048|AAF53766.1| 894|Drosophila melanogaster CG10689-PA
protein.
Length = 894
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 186 LPTTVDYCQTSRAGSRYALPPVNAGLHYYYLTVRYNQNAAARPN 55
LP TV+ + + AG Y + ++ G HY T+++NQ PN
Sbjct: 786 LPETVNVRKAATAGYFYHVARLSKGGHYK--TIKHNQTVMIHPN 827
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,457,481
Number of Sequences: 53049
Number of extensions: 681701
Number of successful extensions: 1633
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1632
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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