Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1072
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical...    30   1.4  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>AC024746-10|AAF60400.2|  483|Caenorhabditis elegans Hypothetical
           protein Y110A2AL.2 protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 163 SN*PC-GLTICPTTSKCWFALLLPYGKVQPERCCSSQ*LVRHSREVTWFC 17
           SN  C G T  PT  +CWF  ++    V  +RCC  + +   S   T  C
Sbjct: 64  SNKSCRGPTKAPTFGRCWFGAVM----VDGDRCCDKENVTEGSPNSTQTC 109


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/73 (26%), Positives = 36/73 (49%)
 Frame = +1

Query: 25  TSLPVSVVQVIGTSSSVLVVPYRKVIVMQTSIYWW*GIS*ARTASLTVVNCSWQLPLITL 204
           TS+  + +  + T+ S+ +  ++  I+ +   +WW G+   +  S    N +W LP +  
Sbjct: 505 TSIGGNGLMTVATNDSMKL--FKTGILEKWHDFWWVGL--IKKDS----NWTWMLPELVT 556

Query: 205 LGESIPWARKVKY 243
               IPWAR  K+
Sbjct: 557 DNTPIPWARDQKF 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,271,174
Number of Sequences: 27780
Number of extensions: 340849
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)