Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1071
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19154-4|CAA79556.1|  139|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF026206-5|AAK39307.1|  141|Caenorhabditis elegans Hypothetical ...    28   6.0  

>Z19154-4|CAA79556.1|  139|Caenorhabditis elegans Hypothetical
           protein C40H1.5 protein.
          Length = 139

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 84  IALQLELVGD*KKLGISGKVRCRGKMG---LIKLYDRD 188
           +A    L+G+ +  G+ GK+ C GK     L+KLYD D
Sbjct: 10  VASSYALIGNTQSAGVRGKLICNGKPAVGVLVKLYDDD 47


>AL117206-1|CAB60446.1|  644|Caenorhabditis elegans Hypothetical
           protein Y67A10A.1 protein.
          Length = 644

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -1

Query: 345 CKLINSRSGLKITILGN-FICNLASSQILAHINYYYEHGNSLSSY*NPLLFLPHR 184
           C+    +  L + ++GN ++ N  S  I AH NY Y     +S   +  LF  HR
Sbjct: 418 CRFAPGKGNLSVMMIGNSYVLNF-SEHIRAHFNYNYSDYRYMSVIASYGLFSDHR 471


>AF026206-5|AAK39307.1|  141|Caenorhabditis elegans Hypothetical
           protein T28B4.3 protein.
          Length = 141

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +3

Query: 81  GIALQLELVGD*KKLGISGKVRCRGKMG---LIKLYDRD 188
           G+A  +E+ G  +   + GK+ C G+     L+KL+D+D
Sbjct: 12  GVAASIEMFGRDQSSAVRGKLICDGRPASGVLVKLWDKD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,091,809
Number of Sequences: 27780
Number of extensions: 292539
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)