Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1071
         (741 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    29   2.4  
At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ...    28   5.7  
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ...    28   5.7  
At1g70300.1 68414.m08088 potassium transporter, putative similar...    28   5.7  
At2g40540.1 68415.m05002 potassium transporter, putative (KT2) i...    28   7.5  

>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -1

Query: 369 FRLKPAFECKLINSRSGLKITILGNFICNLASSQI--LAHINYYYEHGNSLSSY*NPLL 199
           F L+P FE K + SRS L   ++   + + AS ++  L H+  +  H   L S   PLL
Sbjct: 360 FNLEPKFEGKDMLSRSALLSELVSKGVLSCASQEVKDLFHVLEHEFHPLDLGSKIQPLL 418


>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 81  GIALQLELVGD*KKLG--ISGKVRCRGKMGLIKLYDRDGAGTIVGFSNSRDYYR 236
           GI  +LEL G  + LG    GK +   K G +  +D D    +VGF    +YY+
Sbjct: 173 GILKELELAGF-QYLGGPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYK 225


>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 81  GIALQLELVGD*KKLG--ISGKVRCRGKMGLIKLYDRDGAGTIVGFSNSRDYYR 236
           GI  +LEL G  + LG    GK +   K G +  +D D    +VGF    +YY+
Sbjct: 173 GILKELELAGF-QYLGGPDDGKRQIELKPGFLMEHDHDVGAVVVGFDRYFNYYK 225


>At1g70300.1 68414.m08088 potassium transporter, putative similar to
           potassium transporter HAK2p [Mesembryanthemum
           crystallinum] gi|14091471|gb|AAK53759; KUP/HAK/KT
           Transporter family member, PMID:11500563; contains Pfam
           profile PF02705: K+ potassium transporter
          Length = 782

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 105 LTQAVKQFRAVSGLESKVSTKHYK 34
           LT A+  F AVSG+E  +S +H+K
Sbjct: 172 LTPAISVFSAVSGVELSMSKEHHK 195


>At2g40540.1 68415.m05002 potassium transporter, putative (KT2)
           identical to putative potassium transporter AtKT2p
           [Arabidopsis thaliana] gi|2384671|gb|AAC49845, strong
           similarity to potassium transporter HAK2p
           [Mesembryanthemum crystallinum] GI:14091471; KUP/HAK/KT
           Transporter family member, PMID:11500563
          Length = 794

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 105 LTQAVKQFRAVSGLESKVSTKHYK 34
           LT A+  F AVSGLE  +S +H++
Sbjct: 170 LTPAISVFSAVSGLELNMSKEHHQ 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,202,194
Number of Sequences: 28952
Number of extensions: 271977
Number of successful extensions: 484
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)