Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1070
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    27   1.6  
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.6  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   3.7  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    26   5.0  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   5.0  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.7  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   8.7  

>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +1

Query: 301 NLTVLPLNSTHHFPNCAPSLLDLIFVSSRDHVADHGQCSADAFSYHD 441
           +L  L    TH + +C P+  DL+ +     +++H Q +A  +  H+
Sbjct: 530 SLQCLLQRMTHPYVDCRPTTQDLLAMPEMIFISEHSQKAAIIYEDHN 576


>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -1

Query: 379 KRK*DQEVKEHSLENDESSSTAEQLSLLIRSSSEIK 272
           KRK  ++V   S E+DESSS  + L  +IRS+ E++
Sbjct: 259 KRK--RKVLSSSSEDDESSSPEDLLKPIIRSTEEME 292


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
 Frame = +1

Query: 496  LLRSFNGMDLESLREDAGS---IDWTALTCSTSINEKVDQF 609
            +LR+FN   L    +D  S   I WTA+ C T+I+E  D+F
Sbjct: 1633 ILRTFNSYVLVMNSDDLLSYSQILWTAIACLTTIHE--DEF 1671


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -1

Query: 358 VKEHSLENDESS---STAEQLSLLIRSSSEIKWSYGNSP 251
           V E   +NDE S   S  + L LL++ S    W + N+P
Sbjct: 136 VTEADTKNDERSTLRSLDKSLYLLVKKSKSSGWQFPNTP 174


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 508 NCAAEEFLILLWEVVLYMKR 449
           N A  E ++ LW+ +LY KR
Sbjct: 425 NIAFPEIILFLWQAILYNKR 444


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 158 ALQQIKSNQIKKVLFNINESTYLLNVKRIT 69
           ALQQ   N  + V  NIN   +L+   RIT
Sbjct: 122 ALQQNVQNLFQSVQLNINNPNFLIMQGRIT 151


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +1

Query: 454 SYKVRPPKAKSKTLLLRS--FNGMDLESLREDAGSIDWT 564
           SY++R P+A ++ LLL    F   + +  R D   ++W+
Sbjct: 310 SYRIRIPRAPAEFLLLNQPIFQAFNKKCSRFDHEPVEWS 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,320,743
Number of Sequences: 5004
Number of extensions: 43310
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)