Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1070
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925     31   0.94 
12_01_0741 + 6649988-6653065                                           30   1.2  
12_01_0731 - 6516894-6517473,6517485-6519574                           30   1.2  
01_05_0774 + 25066827-25067357,25067502-25067755,25067896-250681...    30   1.6  
09_06_0234 - 21747724-21747839,21748027-21748096,21749157-217492...    29   2.9  
12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490     28   6.7  
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763...    27   8.8  

>03_02_0853 + 11786022-11786105,11786509-11786592,11786915-11787925
          Length = 392

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 340 PNCAPSLLDLIFVSSRDHVADHGQCSADAFS---YHDLIFV 453
           P  AP L+DL+ VSSR H  D G     AF+   Y ++ F+
Sbjct: 150 PPWAPMLIDLLGVSSRRHGLDDGSSDLAAFARRQYRNIAFL 190


>12_01_0741 + 6649988-6653065
          Length = 1025

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 590 LIEVEHVKAVQSMLPASSRRLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEH 411
           L+  +H  + +++ PA+   L       L+ +R F+  +G    Y    RSW   A A+ 
Sbjct: 17  LVLADHTSSTEAVAPAAC--LPDQAAALLQLKRSFNATIGD---YSAAFRSWVAVAGADC 71

Query: 410 CPW 402
           C W
Sbjct: 72  CSW 74


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -3

Query: 590 LIEVEHVKAVQSMLPASSRRLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEH 411
           L+  +H  + +++ PA+   L       L+ +R F+  +G    Y    RSW   A A+ 
Sbjct: 17  LVLADHTSSTEAVAPAAC--LPDQAAALLQLKRSFNATIGD---YSAAFRSWVAVAGADC 71

Query: 410 CPW 402
           C W
Sbjct: 72  CSW 74


>01_05_0774 +
           25066827-25067357,25067502-25067755,25067896-25068100,
           25068391-25068816
          Length = 471

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/66 (25%), Positives = 34/66 (51%)
 Frame = +1

Query: 358 LLDLIFVSSRDHVADHGQCSADAFSYHDLIFVSYKVRPPKAKSKTLLLRSFNGMDLESLR 537
           LL L+  S+  H A+HGQ S+   +  ++  + Y+V      + TL  +++  +++  + 
Sbjct: 304 LLGLLLESNMRHTAEHGQ-SSQGLTIEEVTMILYEVLRLYPPAVTLTRQTYKQIEIGGVT 362

Query: 538 EDAGSI 555
             AG I
Sbjct: 363 YPAGVI 368


>09_06_0234 -
           21747724-21747839,21748027-21748096,21749157-21749294,
           21749389-21749493,21750157-21750527,21750612-21750694,
           21750803-21751063,21751425-21751606,21752539-21752649,
           21752727-21752798,21752883-21753036,21753329-21753341,
           21754015-21754084,21754409-21754485,21754582-21754640,
           21755327-21755580
          Length = 711

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -3

Query: 503 RSRRVFDFALGGRTLYETKIRSW 435
           R   V DF LG RTL  T IR W
Sbjct: 63  RKDAVIDFCLGSRTLSSTPIRFW 85


>12_02_0425 - 18954427-18955020,18955330-18955350,18956380-18956490
          Length = 241

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 17/74 (22%), Positives = 33/74 (44%)
 Frame = +1

Query: 343 NCAPSLLDLIFVSSRDHVADHGQCSADAFSYHDLIFVSYKVRPPKAKSKTLLLRSFNGMD 522
           N   +L + + + SRD+V       A   + + +     +V+P   +S+        G+D
Sbjct: 158 NIVEALSEFVEIESRDNVQVDISTDAGLGTVYSVTVPVRRVKPEYQESEEQYRGKIVGVD 217

Query: 523 LESLREDAGSIDWT 564
            +   E +GS+D T
Sbjct: 218 FKDTGETSGSVDVT 231


>08_02_0546 -
           18474217-18475133,18475207-18475396,18475870-18476313,
           18476629-18477495,18478858-18479367
          Length = 975

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 560 QSMLPASSRRLSRS-IP-LKLRSRRVFDFALGGRTLYETKIRSWYEKASA 417
           Q M  A S+R SR  +P L + ++ + D A   +T+Y   ++ W+  A++
Sbjct: 459 QKMEEADSKRSSRHPVPVLSILAKAIGDLATKEKTVYSPVLKKWHPLATS 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,623,710
Number of Sequences: 37544
Number of extensions: 268532
Number of successful extensions: 805
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)