Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1070
         (610 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB037805-1|BAA92622.1|  652|Homo sapiens KIAA1384 protein protein.     30   5.5  
BC040457-1|AAH40457.1|  478|Homo sapiens calcium/calmodulin-depe...    29   9.7  
AF145711-1|AAD30559.1|  489|Homo sapiens calcium/calmodulin-depe...    29   9.7  
AF145710-1|AAD30558.1|  478|Homo sapiens calcium/calmodulin-depe...    29   9.7  
AF091486-1|AAD55815.1|  478|Homo sapiens calmodulin-dependent pr...    29   9.7  
AC005254-1|AAC25581.1|  315|Homo sapiens PGCN_HUMAN, PARTIAL CDS...    29   9.7  
AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein p...    29   9.7  
AB023185-1|BAA76812.1|  527|Homo sapiens KIAA0968 protein protein.     29   9.7  

>AB037805-1|BAA92622.1|  652|Homo sapiens KIAA1384 protein protein.
          Length = 652

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 304 LTVLPLNSTHHFPNCAPSLLDLIFV-SSRDHVADHGQCSADAFSYHDLIFVSYKVRPP 474
           LT++P NS HH   C   + + +FV    D    +G+ S +  S +D  F S+   PP
Sbjct: 379 LTIMPYNSAHH---CVVEVENFLFVLGGEDQWNPNGKHSTNFVSRYDPRFNSWIQLPP 433


>BC040457-1|AAH40457.1|  478|Homo sapiens
           calcium/calmodulin-dependent protein kinase (CaM kinase)
           II alpha protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 533 RLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEHC 408
           RL  SI  +     +FD   GG    +   R +Y +A A HC
Sbjct: 74  RLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHC 115


>AF145711-1|AAD30559.1|  489|Homo sapiens
           calcium/calmodulin-dependent protein kinase II alpha-B
           subunit protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 533 RLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEHC 408
           RL  SI  +     +FD   GG    +   R +Y +A A HC
Sbjct: 74  RLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHC 115


>AF145710-1|AAD30558.1|  478|Homo sapiens
           calcium/calmodulin-dependent protein kinase II alpha
           subunit protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 533 RLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEHC 408
           RL  SI  +     +FD   GG    +   R +Y +A A HC
Sbjct: 74  RLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHC 115


>AF091486-1|AAD55815.1|  478|Homo sapiens calmodulin-dependent
           protein kinase II alpha protein.
          Length = 478

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 533 RLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEHC 408
           RL  SI  +     +FD   GG    +   R +Y +A A HC
Sbjct: 74  RLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHC 115


>AC005254-1|AAC25581.1|  315|Homo sapiens PGCN_HUMAN, PARTIAL CDS
           protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 466 VLYMKRR*DHGMRKRQLNTVHGQPHGHEKKRK*DQEVKEHSLENDE 329
           ++  K R  H MR+   +  H   H H K RK  ++ K+H  E+ E
Sbjct: 263 IVCTKPRRSHRMRRHHHHHQHHHQHHHHKSRKERRKHKKHPTEDWE 308


>AB210004-1|BAE06086.1| 1335|Homo sapiens CSPG3 variant protein
            protein.
          Length = 1335

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 466  VLYMKRR*DHGMRKRQLNTVHGQPHGHEKKRK*DQEVKEHSLENDE 329
            ++  K R  H MR+   +  H   H H K RK  ++ K+H  E+ E
Sbjct: 1283 IVCTKPRRSHRMRRHHHHHQHHHQHHHHKSRKERRKHKKHPTEDWE 1328


>AB023185-1|BAA76812.1|  527|Homo sapiens KIAA0968 protein protein.
          Length = 527

 Score = 29.5 bits (63), Expect = 9.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -3

Query: 533 RLSRSIPLKLRSRRVFDFALGGRTLYETKIRSWYEKASAEHC 408
           RL  SI  +     +FD   GG    +   R +Y +A A HC
Sbjct: 123 RLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHC 164


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,582,616
Number of Sequences: 237096
Number of extensions: 1395362
Number of successful extensions: 3068
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3068
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)