Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1070
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.3  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   7.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 152  QQIKSNQIKKVLFNINESTYLLNVKRITA 66
            QQI+  Q+K+V+ N  +S     ++RI A
Sbjct: 1059 QQIQQQQLKRVVTNQQQSIQTSGMQRIIA 1087


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 267 PMGTVPLPGVSSDLF 223
           P+ ++PLPG   DLF
Sbjct: 474 PLPSLPLPGADDDLF 488


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 LGFATNQIKSNQKSFIQHK*KYILIERQKNYRQ 64
           LG ATN I+S   S  Q++ K   +E    YR+
Sbjct: 371 LGHATNLIQSLDSSRRQYREKVKQVEEYMAYRK 403


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 162 LGFATNQIKSNQKSFIQHK*KYILIERQKNYRQ 64
           LG ATN I+S   S  Q++ K   +E    YR+
Sbjct: 339 LGHATNLIQSLDSSRRQYREKVKQVEEYMAYRK 371


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 260 EQSHSQGYRPIFFVARIF 207
           ++   Q Y+PI+FVA  F
Sbjct: 429 QKYQDQDYQPIYFVADSF 446


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 544 HLLEDFQDPYH*NCAAEEFLILLWEVVLYMKRR 446
           +L+ D  DP    C+ +E+ I+   ++LY   R
Sbjct: 193 NLIPDKNDPDSKECSNQEYEIMKDNLLLYNHAR 225


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 239 TPGSGTVPIGP 271
           TPGSG++P  P
Sbjct: 235 TPGSGSLPASP 245


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 274 LFRSMIESVNLTVLPLNSTHHFPNCA 351
           ++ S + ++   V  LN TH FPN A
Sbjct: 212 MWPSDLRTIYSRVRNLNRTHGFPNDA 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,259
Number of Sequences: 438
Number of extensions: 3097
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)