Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1069
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    28   0.94 
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    27   1.2  
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    27   1.2  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    27   1.6  
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma...    27   2.2  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.0  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    25   8.8  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 10/48 (20%), Positives = 23/48 (47%)
 Frame = +3

Query: 315 WNCKFVHYYDWILYFYNHKFRQDYTINSINKDKQYLIYSQFDNKRQEQ 458
           W C  +  +   ++     FR+ Y +++I   K   +YS  ++ +Q +
Sbjct: 189 WTCLSIENFGISIHVITKNFREYYKLDNIEHVKDETLYSDLEHGKQSR 236


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +2

Query: 182 YVINATLDRGNSIAMIMILHVLRNCFKISYKLEVPQ 289
           ++IN  LD   S AMI I H+  N  K+S  L +PQ
Sbjct: 458 FLINHPLDA--SAAMIFIQHIYENRDKVSGCLHLPQ 491


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 378 QDYTINSINKDKQYLIYSQFDNKRQEQKFDNK*YACVCAS 497
           ++ +I+ I KD++Y +Y Q D K    K  +K  A   AS
Sbjct: 208 ENVSISVIGKDEKYTLYDQNDTKEWLDKLGDKGPAAARAS 247


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 333 VQTYNSN*L*SNFDYCGTSSLYDILKQLRKTCNI 232
           V+T+N+  L ++FD+C T   Y ++  L  TC +
Sbjct: 161 VKTHNNAPL-TSFDWCKTDPSYIVVSSLDTTCTV 193


>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 318

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 261 LKQLRKTCNIIIMAIEFPLSNVAL 190
           ++Q   TCN++IM +E PL  V +
Sbjct: 131 MEQRISTCNLLIMQLEIPLEAVEI 154


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 193 VDHVFFITVDLLLRMHVTDACSY 125
           ++++F I  DLLLR+ + D C +
Sbjct: 911 LENIFSIASDLLLRLPLKDQCDF 933


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 194 ATLDRGNSIAMIMILHVLRNCF 259
           A +  G S+A+ + LH LR+CF
Sbjct: 190 APVHSGPSMALRIFLHFLRSCF 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,953,623
Number of Sequences: 5004
Number of extensions: 36805
Number of successful extensions: 72
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)