Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1069
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-rel...    27   5.6  
At1g42560.1 68414.m04907 seven transmembrane MLO family protein ...    27   9.8  

>At2g45540.1 68415.m05663 WD-40 repeat family protein / beige-related
            contains Pfam PF02138: Beige/BEACH domain; contains Pfam
            PF00400: WD domain, G-beta repeat (3 copies)
          Length = 2946

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 275  VYMIS*NSYVKRVISLSWQLNSPYPMSR*SRIFHHGRPTSSDACDRCV*LFK 120
            V ++  N    RV    WQ N+P        +FHHG+ T++      + +FK
Sbjct: 2553 VVIVDMNVPAARVAQHKWQPNTPDGQGT-PFLFHHGKATTTSTSGSLMRMFK 2603


>At1g42560.1 68414.m04907 seven transmembrane MLO family protein /
           MLO-like protein 9 (MLO9) nearly identical to membrane
           protein Mlo9 [Arabidopsis thaliana] GI:14091588; similar
           to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
           [Hordeum vulgare][Barley]
          Length = 467

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -2

Query: 211 PPIQCRVDHVFFITVDLLLRMHV 143
           PP+ C+ D+V  I+++ L ++H+
Sbjct: 137 PPVNCKKDYVALISLNALHQVHI 159


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,770,382
Number of Sequences: 28952
Number of extensions: 175156
Number of successful extensions: 350
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)