Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1068
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230...    30   2.5  
07_01_1157 + 10954619-10954835,10956078-10957114                       29   3.3  
12_01_0038 - 312152-312748,312930-313362,313572-314440,314535-31...    29   5.8  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    29   5.8  
06_03_1296 - 29104857-29105870                                         28   7.6  
03_06_0581 + 34886728-34886817,34886990-34887175,34887332-348875...    28   7.6  

>01_06_1556 -
           38222071-38222708,38222795-38222822,38222950-38223070,
           38223206-38223318,38223424-38223506,38223868-38223930,
           38224100-38224254,38224411-38224580,38225101-38225189,
           38225304-38225496,38225655-38225779,38226069-38226475,
           38226855-38226919,38227414-38227692,38227772-38227845,
           38228241-38228292,38228366-38228473,38228871-38228972,
           38229100-38229173,38229262-38229435,38229667-38229771,
           38229867-38229977,38230364-38230487
          Length = 1150

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = -1

Query: 282 SPAVWVVRA*GSRKISRILGHRIRRSSSDWQDGWVA--HPFWYRHSLWGVLSEGVHIAE 112
           +PAV V     S+KI R++GHR     +D+Q  ++       + H  W V  E +H+++
Sbjct: 354 APAVKVTEVLTSKKIQRLVGHRRILQEADFQYQFLVKWQSLSHHHDCW-VPLEWLHVSD 411


>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 154 MPIPEWVRNPAILPIARAASNSVPKYP 234
           MP P ++  P + P+  +AS+  PKYP
Sbjct: 1   MPFPYFLLAPLLTPLPHSASDPQPKYP 27


>12_01_0038 -
           312152-312748,312930-313362,313572-314440,314535-314584,
           314589-315192,315674-315718,316100-316317,317020-317332,
           318681-318716
          Length = 1054

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 151 GMPIPEWVRNPA 186
           G+PIP+WV+NPA
Sbjct: 776 GIPIPDWVKNPA 787


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +1

Query: 151 GMPIPEWVRNPA 186
           G+PIP+WV+NPA
Sbjct: 900 GIPIPDWVKNPA 911


>06_03_1296 - 29104857-29105870
          Length = 337

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 432 NTGWVSLCMSKLPPLSFHQSVGTLLKCVTSIHYDSPDMYSAN 557
           N GW  L M++  PLSF   +  L+   T  H D P + S N
Sbjct: 58  NGGW--LLMAQHKPLSFQDQIVFLVHPSTGTHLDLPVLRSPN 97


>03_06_0581 +
           34886728-34886817,34886990-34887175,34887332-34887543,
           34888161-34888318,34888615-34888773,34888921-34888973,
           34889265-34889405,34889788-34889823,34890542-34890776,
           34891017-34891144
          Length = 465

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
 Frame = -3

Query: 205 LERLAGWLGCAPILVSA--------FPVGCA*RGRPHRRTDSLGKWLGGVRLGTRGPELP 50
           LE+   WL   P+  +A         PVG    G+  RR  + GK   G+R G   P++ 
Sbjct: 394 LEQPPAWLPPGPLQAAAPAAARGTPSPVGHGLGGQGARRVGNWGKIANGLRCGPIRPQVE 453

Query: 49  RPE*G-WR 29
           R E G W+
Sbjct: 454 RKEGGEWK 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,081,020
Number of Sequences: 37544
Number of extensions: 554937
Number of successful extensions: 1482
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1481
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)