Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1068
         (810 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113559-1|AAM29564.1|  163|Drosophila melanogaster RH08259p pro...    53   4e-07
AE013599-671|AAF59072.1|  214|Drosophila melanogaster CG8736-PA ...    53   4e-07
AE014134-1954|AAF53012.2|  777|Drosophila melanogaster CG31869-P...    31   1.4  
BT015296-1|AAT94525.1| 1923|Drosophila melanogaster AT26369p pro...    31   1.9  
AE013599-2711|AAM68461.1| 1922|Drosophila melanogaster CG30116-P...    31   1.9  
AE013599-2710|AAF57680.2| 1701|Drosophila melanogaster CG30116-P...    31   1.9  
AE013599-2709|AAF57681.2| 1698|Drosophila melanogaster CG30116-P...    31   1.9  
AE013599-2708|AAM68460.1| 1698|Drosophila melanogaster CG30116-P...    31   1.9  
BT028779-1|ABI34160.1|  127|Drosophila melanogaster IP05440p pro...    29   7.5  
AE014296-2789|AAF49422.1|  134|Drosophila melanogaster CG13026-P...    29   7.5  
AE013599-3304|AAM71024.1|  275|Drosophila melanogaster CG30401-P...    29   9.9  
AE013599-3303|AAM71023.1|  377|Drosophila melanogaster CG30401-P...    29   9.9  

>AY113559-1|AAM29564.1|  163|Drosophila melanogaster RH08259p
           protein.
          Length = 163

 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 46  AAVALAREYPAGLHPAICPNYPFCDVDALAKHTP-QGMPIPEWVRNPAILPIARAASNSV 222
           AA     +YPAG++P  CPNYP+CDV+A     P    P+P W                 
Sbjct: 100 AAAPGGDKYPAGVNPQTCPNYPYCDVNAGHAGAPVAAPPLPGWTER-------------- 145

Query: 223 PKYPADFPAALCPNYPYC 276
             YPA      CPN+PYC
Sbjct: 146 -LYPAGVSPHQCPNFPYC 162



 Score = 48.4 bits (110), Expect = 1e-05
 Identities = 41/118 (34%), Positives = 51/118 (43%), Gaps = 34/118 (28%)
 Frame = +1

Query: 25  LFAILTLAAVAL-----AREYPAGLHPAICPNYPFCDVDAL---------------AKHT 144
           LFA     AVA      A +YPAG++P  CPN+P CD   L                +  
Sbjct: 6   LFATFVALAVAKPQHQPAAQYPAGVNPQDCPNFPICDNARLHNPQPQWGAPQPQWNPQPQ 65

Query: 145 PQGMPIPEWVR-----NPAILPI--ARAASNSVP-------KYPADFPAALCPNYPYC 276
           PQ  P P+W +     NP   P   A+ + N+ P       KYPA      CPNYPYC
Sbjct: 66  PQWNPQPQWQQPQPQWNPQPQPQWQAQPSWNAAPAAAPGGDKYPAGVNPQTCPNYPYC 123



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 64  REYPAGLHPAICPNYPFCD 120
           R YPAG+ P  CPN+P+C+
Sbjct: 145 RLYPAGVSPHQCPNFPYCN 163


>AE013599-671|AAF59072.1|  214|Drosophila melanogaster CG8736-PA
           protein.
          Length = 214

 Score = 53.2 bits (122), Expect = 4e-07
 Identities = 29/78 (37%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 46  AAVALAREYPAGLHPAICPNYPFCDVDALAKHTP-QGMPIPEWVRNPAILPIARAASNSV 222
           AA     +YPAG++P  CPNYP+CDV+A     P    P+P W                 
Sbjct: 151 AAAPGGDKYPAGVNPQTCPNYPYCDVNAGHAGAPVAAPPLPGWTER-------------- 196

Query: 223 PKYPADFPAALCPNYPYC 276
             YPA      CPN+PYC
Sbjct: 197 -LYPAGVSPHQCPNFPYC 213



 Score = 50.4 bits (115), Expect = 3e-06
 Identities = 44/124 (35%), Positives = 55/124 (44%), Gaps = 35/124 (28%)
 Frame = +1

Query: 10  NMYGKL-FAILTLAAVAL-----AREYPAGLHPAICPNYPFCDVDAL------------- 132
           NM+ KL FA     AVA      A +YPAG++P  CPN+P CD   L             
Sbjct: 51  NMFCKLLFATFVALAVAKPQHQPAAQYPAGVNPQDCPNFPICDNARLHNPQPQWGAPQPQ 110

Query: 133 --AKHTPQGMPIPEWVR-----NPAILPI--ARAASNSVP-------KYPADFPAALCPN 264
              +  PQ  P P+W +     NP   P   A+ + N+ P       KYPA      CPN
Sbjct: 111 WNPQPQPQWNPQPQWQQPQPQWNPQPQPQWQAQPSWNAAPAAAPGGDKYPAGVNPQTCPN 170

Query: 265 YPYC 276
           YPYC
Sbjct: 171 YPYC 174



 Score = 33.5 bits (73), Expect = 0.35
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 64  REYPAGLHPAICPNYPFCD 120
           R YPAG+ P  CPN+P+C+
Sbjct: 196 RLYPAGVSPHQCPNFPYCN 214


>AE014134-1954|AAF53012.2|  777|Drosophila melanogaster CG31869-PA
           protein.
          Length = 777

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 62  PASTQPDSTQPFAQTIRSAMWTPSLSTPHRECRYQNGC 175
           P+S  P+  QP  Q ++  +W    +T    C+YQ  C
Sbjct: 123 PSSASPEQQQPQGQCLQDGLWVAESAT---RCQYQTSC 157


>BT015296-1|AAT94525.1| 1923|Drosophila melanogaster AT26369p
           protein.
          Length = 1923

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 HRECRYQNGCATQPSCQSLELRRILCPSIRLIFRLP 253
           HR  R+    AT  S  +LEL R++C  I +IF +P
Sbjct: 409 HRVIRFAK--ATPRSAYNLELLRVICQQISIIFNIP 442


>AE013599-2711|AAM68461.1| 1922|Drosophila melanogaster CG30116-PA,
           isoform A protein.
          Length = 1922

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 HRECRYQNGCATQPSCQSLELRRILCPSIRLIFRLP 253
           HR  R+    AT  S  +LEL R++C  I +IF +P
Sbjct: 409 HRVIRFAK--ATPRSAYNLELLRVICQQISIIFNIP 442


>AE013599-2710|AAF57680.2| 1701|Drosophila melanogaster CG30116-PD,
           isoform D protein.
          Length = 1701

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 HRECRYQNGCATQPSCQSLELRRILCPSIRLIFRLP 253
           HR  R+    AT  S  +LEL R++C  I +IF +P
Sbjct: 409 HRVIRFAK--ATPRSAYNLELLRVICQQISIIFNIP 442


>AE013599-2709|AAF57681.2| 1698|Drosophila melanogaster CG30116-PC,
           isoform C protein.
          Length = 1698

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 HRECRYQNGCATQPSCQSLELRRILCPSIRLIFRLP 253
           HR  R+    AT  S  +LEL R++C  I +IF +P
Sbjct: 409 HRVIRFAK--ATPRSAYNLELLRVICQQISIIFNIP 442


>AE013599-2708|AAM68460.1| 1698|Drosophila melanogaster CG30116-PB,
           isoform B protein.
          Length = 1698

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 146 HRECRYQNGCATQPSCQSLELRRILCPSIRLIFRLP 253
           HR  R+    AT  S  +LEL R++C  I +IF +P
Sbjct: 409 HRVIRFAK--ATPRSAYNLELLRVICQQISIIFNIP 442


>BT028779-1|ABI34160.1|  127|Drosophila melanogaster IP05440p
           protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +1

Query: 13  MYGKLFAILTLAAVALAREYPAGLHPAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAIL 192
           M G L   L L+  + A     G+ PA+ P  P      +   T        W  N   +
Sbjct: 17  MLGYLLLGLVLSHASFATA-TNGVIPAVIPAVPATVPRLVPVATSHQFVTRNW--NRVFV 73

Query: 193 PIARAAS--NSVPKYPADFPAALCPNYPY 273
           P A  A+  N+  KY   +PA    NYPY
Sbjct: 74  PPATVATYPNTYVKYSGGYPAYPAYNYPY 102


>AE014296-2789|AAF49422.1|  134|Drosophila melanogaster CG13026-PA
           protein.
          Length = 134

 Score = 29.1 bits (62), Expect = 7.5
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 2/89 (2%)
 Frame = +1

Query: 13  MYGKLFAILTLAAVALAREYPAGLHPAICPNYPFCDVDALAKHTPQGMPIPEWVRNPAIL 192
           M G L   L L+  + A     G+ PA+ P  P      +   T        W  N   +
Sbjct: 24  MLGYLLLGLVLSHASFATA-TNGVIPAVIPAVPATVPRLVPVATSHQFVTRNW--NRVFV 80

Query: 193 PIARAAS--NSVPKYPADFPAALCPNYPY 273
           P A  A+  N+  KY   +PA    NYPY
Sbjct: 81  PPATVATYPNTYVKYSGGYPAYPAYNYPY 109


>AE013599-3304|AAM71024.1|  275|Drosophila melanogaster CG30401-PA,
           isoform A protein.
          Length = 275

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 159 RHSLWGVLSEGVHIAERIVWANGWVESGWVLAGQSYRG 46
           R  LW ++++ V  AER V ANG    GW L GQ   G
Sbjct: 197 RLPLWQIITDFVDEAERNVNANG----GWYLEGQPATG 230


>AE013599-3303|AAM71023.1|  377|Drosophila melanogaster CG30401-PB,
           isoform B protein.
          Length = 377

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 159 RHSLWGVLSEGVHIAERIVWANGWVESGWVLAGQSYRG 46
           R  LW ++++ V  AER V ANG    GW L GQ   G
Sbjct: 299 RLPLWQIITDFVDEAERNVNANG----GWYLEGQPATG 332


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,771,733
Number of Sequences: 53049
Number of extensions: 930761
Number of successful extensions: 2334
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2332
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)