Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1068
         (810 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein, p...    28   8.4  
At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1...    28   8.4  
At1g30160.1 68414.m03687 expressed protein contains Pfam profile...    28   8.4  

>At3g12610.1 68416.m01570 DNA-damage-repair/toleration protein,
           putative (DRT100) similar to
           DNA-damage-repair/toleration protein DRT100 [Precursor]
           SWISS-PROT:Q00874, NCBI_gi:5701788; contains multiple
           LRR repeats Pfam profile: PF00560
          Length = 372

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 43  LAAVALAREYPAGLHP-AICPNYPFCDVDALAKHTPQGMPIPEWVRNPAILPIARAASNS 219
           L+ V L R    G  P +I       D+D L+K+  +G PIPEW+ N  +L +     NS
Sbjct: 209 LSRVLLGRNELTGSIPESISGMERLADLD-LSKNHIEG-PIPEWMGNMKVLSLLNLDCNS 266

Query: 220 V 222
           +
Sbjct: 267 L 267


>At2g30110.1 68415.m03664 ubiquitin activating enzyme 1 (UBA1) E1;
           identical to GB:U80808
          Length = 1080

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 112 FCDVDALAKHTPQGMPIPEWVRNP 183
           F    A+ +    G+PIPEW +NP
Sbjct: 789 FITATAILRAETFGIPIPEWTKNP 812


>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 311

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 7   INMYGKLFAILTLAAVAL-AREYPAGLHPAICPNYPF 114
           I+++G+LFAIL L    +   EYP G+ P   P  P+
Sbjct: 269 ISLHGRLFAILNLTKRTMGCYEYPQGI-PKRIPYLPY 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,128,572
Number of Sequences: 28952
Number of extensions: 435274
Number of successful extensions: 1008
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)