Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1065
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0609 + 4404287-4405023,4405496-4405631,4405724-4405876,440... 36 0.025
12_02_0090 + 13493311-13494180 31 0.95
07_01_0139 - 1014952-1015165,1015271-1015350,1015420-1015629,101... 29 2.9
05_01_0586 - 5262878-5263054,5263267-5263328,5264350-5264539,526... 29 2.9
11_06_0610 - 25449085-25453284 29 3.8
06_03_1146 - 28004896-28005554,28005664-28005844 29 3.8
04_03_0226 - 12977443-12977895 29 3.8
02_05_1221 - 35023734-35023868,35024002-35024217,35024349-350246... 29 5.1
02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354 29 5.1
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 28 6.7
11_01_0115 - 889159-889921,889962-890053,890141-890359,890738-89... 28 8.8
>06_01_0609 +
4404287-4405023,4405496-4405631,4405724-4405876,
4405985-4406128,4406224-4406375,4406453-4406552,
4406653-4406775,4406876-4407037,4407190-4407247,
4407324-4407502,4408294-4408402,4408567-4408637,
4408891-4408986,4409727-4409803,4410983-4411066,
4411473-4411607,4411744-4411819,4413072-4413167,
4413580-4413671,4413745-4413868,4413966-4414052
Length = 996
Score = 36.3 bits (80), Expect = 0.025
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +2
Query: 8 SPPKTPVLSREVPRSILQTSSPPKKGSIKLTSLATSQIVKKPSPAVFERSSSIKKTVESK 187
S P+ PV + V + L T S P K + + + +P+ RSS + +T
Sbjct: 16 SSPRKPVAAPAVAQMDLSTPSKPTPRR-KPKAPPVAAPMSPVTPSSVRRSSRLLETPTKV 74
Query: 188 TSNSPVVPLPLPKTK 232
TS +PV P P PK K
Sbjct: 75 TSETPVKPTPTPKRK 89
>12_02_0090 + 13493311-13494180
Length = 289
Score = 31.1 bits (67), Expect = 0.95
Identities = 25/81 (30%), Positives = 35/81 (43%)
Frame = +2
Query: 5 SSPPKTPVLSREVPRSILQTSSPPKKGSIKLTSLATSQIVKKPSPAVFERSSSIKKTVES 184
SSP K P LS SI+ SP S+ T+ +T+ +F RS+ + S
Sbjct: 117 SSPTKVPALSVNPILSIIGVPSPTTTSSLATTTTSTA--------VLFPRSTLSSASTPS 168
Query: 185 KTSNSPVVPLPLPKTKTNEST 247
T+ S V P TK +T
Sbjct: 169 FTTTSSPVTAPKSSTKYTVAT 189
>07_01_0139 -
1014952-1015165,1015271-1015350,1015420-1015629,
1015925-1016044,1016650-1016709,1017129-1017204,
1018189-1018352,1018428-1018490,1018815-1018902,
1018997-1019647,1019965-1020449
Length = 736
Score = 29.5 bits (63), Expect = 2.9
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 53 ILQTSSPPKKGSIKLTSLATSQIVKKP---SPAVFERSSSIKKTVESKTSNSPVV-PLPL 220
++ SSPP +G TS A V P S + E + + + T+ SPV+ PLPL
Sbjct: 82 VVANSSPPPRGRAS-TSAAVGHPVSIPIARSASSAEFRAVHQPPPRAATAASPVLLPLPL 140
Query: 221 PKTKTNESTSA 253
P K ES ++
Sbjct: 141 PSPKPVESDTS 151
>05_01_0586 -
5262878-5263054,5263267-5263328,5264350-5264539,
5265467-5265541
Length = 167
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 134 SPAVFERSSSIKKTVESKTSNSPVVPLPL 220
SPA+F S + T S TS ++PLPL
Sbjct: 30 SPAIFTLSGRVTTTTWSSTSGVAILPLPL 58
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.8
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Frame = +2
Query: 8 SPPK-TPVLSREVPRSILQTSSPP---KKGSIKLTSLATSQIVKKPSPAVFERSSSIKKT 175
SPPK TP + P ++SSPP +G + +T + K P E SS
Sbjct: 672 SPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPPPPA 731
Query: 176 VESKTSNSPVVPLPLPKTKTNESTS 250
E T + P P K+ TS
Sbjct: 732 PEGHTPSPPKSSPPEEKSPPIPPTS 756
>06_03_1146 - 28004896-28005554,28005664-28005844
Length = 279
Score = 29.1 bits (62), Expect = 3.8
Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +2
Query: 8 SPPKTPVLSREVPRSILQTSSPPKKGSIKLTSLATSQIVKKPSPAVFERSSSIKKTVESK 187
SPP P VP +S P + SLA S + PSP+ + +
Sbjct: 144 SPPAVPPPVAPVPMPSPASSPPSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTS 203
Query: 188 TSNSPVVP---LPLPKT 229
T +SP P P P T
Sbjct: 204 TPSSPPAPAAMAPSPST 220
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +2
Query: 71 PPKKGSIKLTSLATSQIVKKPSPAVFERS---SSIKKTVESKTSNSPVVPLPLPKTKTNE 241
PP + + S A+S P+PA S S + T S SP+ P P P T T
Sbjct: 149 PPPVAPVPMPSPASSP--PSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPS 206
Query: 242 STSA 253
S A
Sbjct: 207 SPPA 210
>04_03_0226 - 12977443-12977895
Length = 150
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 76 WRRRSLKNRTWNFSRKDRSFGWR 8
WRR S RTW ++ RS+ WR
Sbjct: 60 WRRGSQWRRTWRGCQRRRSWAWR 82
>02_05_1221 -
35023734-35023868,35024002-35024217,35024349-35024675,
35024845-35025218,35025560-35025647,35025767-35025910,
35026053-35026178,35026264-35026412,35026539-35026644,
35026757-35026900,35027018-35027194,35027304-35027453,
35027570-35027788
Length = 784
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 605 SRPGSMRRPRVSRLSSDAKDESPSVSSPAPQS 700
S PG RR R+ + A + PS S+PAP+S
Sbjct: 29 SLPGRRRRRPSRRVLAVATEPKPSASAPAPRS 60
>02_05_1025 + 33588053-33589998,33590357-33590630,33591031-33591354
Length = 847
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 611 PGSMRRPRVSRLSSDAKDESPSVSSPA 691
P S+R PRV +S A SPS +PA
Sbjct: 23 PASLRLPRVMSAASPASPTSPSTPAPA 49
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 5 SSPPKTPVLSREVPRSILQTSSPPKKGSIKLTSLATSQIVKKPSP 139
+S ++PV R RS +SPP++ S + + + + + PSP
Sbjct: 246 ASQSRSPVKERSPSRSPPPATSPPREKSASKSPVKSRSLSRSPSP 290
>11_01_0115 -
889159-889921,889962-890053,890141-890359,890738-891835
Length = 723
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 596 GRQSRPGSMRRPRVSRLSSDAKDESPSVSSPAPQSDRINSVSS 724
G SRP S SR SS A +P +SPAP + S+ S
Sbjct: 209 GGASRPSSPSVKGASRASSPAVRGTPRATSPAPSKCVVPSLVS 251
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,656,100
Number of Sequences: 37544
Number of extensions: 302184
Number of successful extensions: 1033
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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