Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1063
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0097 - 27666456-27666719,27666837-27667022,27667233-276673...    31   0.86 
01_06_0779 - 31931893-31933317                                         28   6.1  
10_06_0001 - 9366721-9367293                                           28   8.0  
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275...    28   8.0  

>05_07_0097 -
           27666456-27666719,27666837-27667022,27667233-27667387,
           27667488-27667620,27667718-27667908,27668078-27668513
          Length = 454

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 352 MLMDVQWVTQHIHLLQPITVHPNMTQSITHLLE 450
           ++M + +  QH+H L P  VHP++  S   L E
Sbjct: 268 IIMGIAYCIQHMHELNPANVHPDLHSSAVFLSE 300


>01_06_0779 - 31931893-31933317
          Length = 474

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 561 LKIGDPVEFEMTYDRRTGK-PIASTVTKIAPEVVLSEARVTG 683
           LK    VE E + D R G   I + + K+APEV + E R TG
Sbjct: 387 LKEKGRVELEGSQDGRKGALAIEAEIFKVAPEVHVVEVRKTG 428


>10_06_0001 - 9366721-9367293
          Length = 190

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = -3

Query: 408 CYWLKKMNMLSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENL 280
           C   K   +  +P  I QH +    G  +  W+HH   P + +
Sbjct: 43  CVHCKNQKIWINPSVIEQHLVTHGFGARYTTWSHHGEIPSKQV 85


>01_06_0231 +
           27727110-27727206,27727315-27727447,27727491-27727553,
           27729069-27729140,27729640-27729783,27729868-27729990,
           27730102-27730157,27730249-27730635,27731176-27731366,
           27731498-27731630,27731715-27731869,27732188-27732379,
           27732490-27732750
          Length = 668

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 352 MLMDVQWVTQHIHLLQPITVHPNMTQSITHLLE 450
           ++M V +  QH+H L P   HP++  S   L E
Sbjct: 481 VIMGVAYCIQHMHELNPSITHPDLHSSAILLSE 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,717,836
Number of Sequences: 37544
Number of extensions: 393744
Number of successful extensions: 904
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 904
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)