Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1063
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 5e-17
SB_31618| Best HMM Match : No HMM Matches (HMM E-Value=.) 77 1e-14
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 31 0.67
SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 29 2.7
SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07) 29 2.7
SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39) 28 6.2
SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07) 28 6.2
SB_48470| Best HMM Match : HNOB (HMM E-Value=0) 28 6.2
>SB_53793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 833
Score = 85.0 bits (201), Expect = 5e-17
Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 4/75 (5%)
Frame = +3
Query: 477 HSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIASTVTKIAPEV 656
HSYGFIQCCER+ R+FFH+SQ+ G+ + L+IGD VEF ++ D+R+ KP+A + + P
Sbjct: 64 HSYGFIQCCERELRIFFHYSQYKGDLDDLRIGDEVEFGVSCDQRSKKPVAVNIVLLTPGT 123
Query: 657 V----LSEARVTGTV 689
V SE +VTG V
Sbjct: 124 VSFEICSEEQVTGIV 138
Score = 68.9 bits (161), Expect = 4e-12
Identities = 28/69 (40%), Positives = 45/69 (65%)
Frame = +3
Query: 447 RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYDRRTGKPIA 626
RE G++ L +GFI+CC+R AR+FFHFS+ ++ ++IGD VEF +T D + K +
Sbjct: 363 REMGVVAALKDGFGFIRCCDRDARMFFHFSELVESSRQIQIGDEVEFSITEDANSMKRVN 422
Query: 627 STVTKIAPE 653
+ +I P+
Sbjct: 423 AIKVRILPK 431
Score = 45.2 bits (102), Expect = 5e-05
Identities = 16/44 (36%), Positives = 29/44 (65%)
Frame = +3
Query: 456 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEF 587
G++ + S+GFI+ ++ + +FFH+S+F + L +GD VEF
Sbjct: 206 GVVSSMKESFGFIERADKVSEIFFHYSEFLDDINELTLGDDVEF 249
Score = 36.7 bits (81), Expect = 0.018
Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +3
Query: 438 PPIRETGIIEKLLHS-YGFIQCCERQAR-LFFHFSQFSGNTEHLKIGDPVEFEMTYDRRT 611
P I + E LL +GFI + + LFFH S+ + N E L+ GD VEF +R
Sbjct: 702 PSIELIRLRELLLRRHFGFIGHENEEGKNLFFHISEVAENVE-LQAGDEVEF-FVVQKRG 759
Query: 612 GKPIASTVTKIAPEVVLSEARVTGT 686
GK A V KI V+ GT
Sbjct: 760 GKLSAVNVRKIRVMVIRKPIAPDGT 784
>SB_31618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 45
Score = 77.0 bits (181), Expect = 1e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Frame = +3
Query: 447 RETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIG 572
RETGIIEKLLHSYGFIQCCER+ R+FFH+SQ+ G+ + L+IG
Sbjct: 3 RETGIIEKLLHSYGFIQCCERELRIFFHYSQYKGDLDDLRIG 44
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 360 HQHCIHLRIGFHHLIW-NHHYNYPEENLGTH-CCRYHY 253
H++C + HH W HHY+YP H C R+HY
Sbjct: 28 HRYCYYRH---HHYCWYRHHYHYPCYRHYYHRCYRHHY 62
>SB_32387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 912
Score = 30.7 bits (66), Expect = 1.2
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 315 WNHHYNYPEENLGTHCCRYHYD 250
W HY+ ++ +G CC HYD
Sbjct: 891 WVFHYDKGKQTIGDECCERHYD 912
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 321 LIWNHHYNYPEENLGTH 271
++WNHHY+ PE L H
Sbjct: 720 VVWNHHYSTPEIELDAH 736
>SB_5852| Best HMM Match : 3_5_exonuc (HMM E-Value=3.4e-07)
Length = 653
Score = 29.5 bits (63), Expect = 2.7
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = -3
Query: 429 LSHIGMNCYWLKKMNMLSHPLDIHQ 355
+ +G++C W+ K +LSHP+ + Q
Sbjct: 68 MKFVGLDCEWVNKKGVLSHPVALLQ 92
>SB_26948| Best HMM Match : LIM (HMM E-Value=2.3e-39)
Length = 351
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 312 NHHYNYPEENLGTHCCRYHYDTKICAACWSAGDLKYLAGEMSVNLAVGTF 163
N + +E L H CR +K+CAAC GD + GE V TF
Sbjct: 152 NEGFTLKDEKLICHGCRGINPSKVCAAC--NGD--FAPGEKKVGYQSKTF 197
>SB_17937| Best HMM Match : TTL (HMM E-Value=4.4e-07)
Length = 491
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Frame = -3
Query: 405 YWLKKMNM---LSHPLDIHQHCIHLRIGFHHLIWNHHYNY 295
+WL+ N L H + +HC + G H L HHY++
Sbjct: 278 FWLRFANKPFALDHFEEYDRHCTVMNYGTHKLKQIHHYDF 317
>SB_48470| Best HMM Match : HNOB (HMM E-Value=0)
Length = 681
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 265 TAVSTQ--VLLGIIIMVVPNQVVETDSQVDTMLMDVQWVTQHIHLLQPITVHPNMTQSIT 438
T ++T+ V+L I V+ + D +DT+ DV WV Q H ++P T
Sbjct: 437 TVITTEDGVMLRIWFHVLLDDCDGNDMYIDTINKDVVWVKQTPH-IRPSNARKYYKSPGT 495
Query: 439 HLLER 453
H +ER
Sbjct: 496 HPVER 500
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,823,784
Number of Sequences: 59808
Number of extensions: 463427
Number of successful extensions: 1400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1381
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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