Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1063
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin... 31 1.0
Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical pr... 30 1.8
AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical ... 30 1.8
Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical p... 29 2.4
Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical pr... 29 3.1
AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical... 29 3.1
AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical... 29 3.1
U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL132860-16|CAB60516.1| 497|Caenorhabditis elegans Hypothetical... 28 7.2
AL132860-15|CAB60499.1| 512|Caenorhabditis elegans Hypothetical... 28 7.2
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 27 9.6
AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical ... 27 9.6
>AC025723-4|AAK29933.2| 1335|Caenorhabditis elegans Rab connectin
related protein 2 protein.
Length = 1335
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Frame = -1
Query: 623 NWFACSTIISH----FKFHRVTYFKMFSITTELTEVEKKTGLPLTALYE 489
+W +C TIISH + +T M + T LTE+EKK P T+LYE
Sbjct: 166 DWISCFTIISHPEKEDQLIGMTLSGMMKVWT-LTELEKKD--PATSLYE 211
>Z66564-8|CAM84731.1| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/71 (23%), Positives = 28/71 (39%)
Frame = -3
Query: 429 LSHIGMNCYWLKKMNMLSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYD 250
L+ I + YW ++H+ + LR +W H+ E N G +Y
Sbjct: 296 LNQIHKSVYWYTLSTFYLTEHEMHK-VVALRPKNPEQLWKRHF---ESNFGRIRALKNYT 351
Query: 249 TKICAACWSAG 217
++C CW G
Sbjct: 352 EQLCLRCWELG 362
>AL032659-3|CAA21749.2| 892|Caenorhabditis elegans Hypothetical
protein Y71H9A.1 protein.
Length = 892
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/71 (23%), Positives = 28/71 (39%)
Frame = -3
Query: 429 LSHIGMNCYWLKKMNMLSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYD 250
L+ I + YW ++H+ + LR +W H+ E N G +Y
Sbjct: 296 LNQIHKSVYWYTLSTFYLTEHEMHK-VVALRPKNPEQLWKRHF---ESNFGRIRALKNYT 351
Query: 249 TKICAACWSAG 217
++C CW G
Sbjct: 352 EQLCLRCWELG 362
>Z68493-10|CAA92797.2| 329|Caenorhabditis elegans Hypothetical
protein C33A12.14 protein.
Length = 329
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 620 WFACSTIISHFKFHRVTYFKMFSITTELTEVEKKTGLPLTALYETIRMEKFFNNAGLS 447
W ACS + + F ++T + IT +++ + + + +T Y TI M F+ GL+
Sbjct: 213 WLACSVLANLILFLKLTRAREQLITQQVSSISYRAQVSIT--YTTIAMIVFYVTNGLT 268
>Z82268-9|CAD89738.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 456 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 602
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>Z82268-8|CAB05201.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 456 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 602
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>AL023835-17|CAD89760.1| 509|Caenorhabditis elegans Hypothetical
protein Y37A1B.1b protein.
Length = 509
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 456 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 602
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>AL023835-16|CAA19496.1| 1222|Caenorhabditis elegans Hypothetical
protein Y37A1B.1a protein.
Length = 1222
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 456 GIIEKLLHSYGFIQCCERQARLFFHFSQFSGNTEHLKIGDPVEFEMTYD 602
G++ K+L +YGF+ +FF S G+ H ++GD V E Y+
Sbjct: 106 GVVTKMLDTYGFV-----DDDVFFQHSVIRGS--HPRVGDKVMVEANYN 147
>U39648-3|AAM15603.1| 434|Caenorhabditis elegans Hypothetical
protein T13C5.2 protein.
Length = 434
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -3
Query: 381 LSHPLDIHQHCIHLRIGFHHLIWNHHYNYPEENLGTHCCRYHYDTKICAAC 229
L +D H HC R ++ ++++YNY N CC YH + C AC
Sbjct: 165 LPRVVDHHSHC---RRSNNNNNYDYNYNYHHNN----CCNYHNHS--CNAC 206
>AL132860-16|CAB60516.1| 497|Caenorhabditis elegans Hypothetical
protein Y56A3A.17b protein.
Length = 497
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 564 KIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGT 686
K+ D V +MT RRT S+ +AP + R GT
Sbjct: 65 KVDDDVAADMTVPRRTENSSESSGETVAPRKIAKAVRKNGT 105
>AL132860-15|CAB60499.1| 512|Caenorhabditis elegans Hypothetical
protein Y56A3A.17a protein.
Length = 512
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 564 KIGDPVEFEMTYDRRTGKPIASTVTKIAPEVVLSEARVTGT 686
K+ D V +MT RRT S+ +AP + R GT
Sbjct: 65 KVDDDVAADMTVPRRTENSSESSGETVAPRKIAKAVRKNGT 105
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 303 YNYPEENLGTHCCRYHYDTKICAACWSAGDLKYLAGEMSVNLAVGTF 163
YNYPE NL C Y+ C ++ LA E+ N GTF
Sbjct: 275 YNYPERNLPLKGCFYNNHGYACCNLKLQNKMEELADELLNN---GTF 318
>AF036693-1|AAK29785.1| 391|Caenorhabditis elegans Hypothetical
protein C49A9.7 protein.
Length = 391
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 423 HIGMNCYWLKKMNMLSHPLDIHQHCIHLRIGFHH 322
+I +N YWL + + +P+ + R+GFHH
Sbjct: 321 YIYINIYWLGMSSTVFNPVIYYFMNKRFRVGFHH 354
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,246,357
Number of Sequences: 27780
Number of extensions: 353801
Number of successful extensions: 1042
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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