Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1063
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    26   0.29 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.6  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   4.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   6.3  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.4  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 ILDLQHSNMQHKSSYRNGTYSSEYPSSPRDNYN 305
           I  L +  + + ++Y N  Y++ Y +   +NYN
Sbjct: 315 ISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYN 347


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 QFKWKMFQPPDSHSSPLQDILDLQHS 227
           QF+   +Q  D H   +Q+ILD Q S
Sbjct: 282 QFRTSDYQQNDIHYEGVQNILDTQSS 307


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 QFKWKMFQPPDSHSSPLQDILDLQHS 227
           QF+   +Q  D H   +Q+ILD Q S
Sbjct: 282 QFRTSDYQQNDIHYEGVQNILDTQSS 307


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 150 QFKWKMFQPPDSHSSPLQDILDLQHS 227
           QF+   +Q  D H   +Q+ILD Q S
Sbjct: 282 QFRTSDYQQNDIHYEGVQNILDTQSS 307


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 222 HSNMQHKSSYRNGTYSSEYPSSPRDNYN 305
           H+N  +K +Y N  Y++   ++  +NYN
Sbjct: 324 HNNNNYKYNYNNNNYNN---NNYNNNYN 348


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 382 AESPIGHPSALYPPEN 335
           A SP+G PSA   P++
Sbjct: 92  ANSPVGSPSAALQPQH 107


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 183 SHSSPLQDILDLQHSNMQHKSSYRNGTYSSEYP 281
           S  S L ++LDL+ + +   ++  N  YS+  P
Sbjct: 382 SSKSLLANVLDLEDNALASHNNLLNNVYSTPGP 414


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 536 TEVEKKTGLPLTALYETIRMEKFFN-NAGLSNR 441
           ++ E+K G      Y+T+ +EK F+ N  L+ R
Sbjct: 266 SQFERKRGRQTYTRYQTLELEKEFHYNRYLTRR 298


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 406 LLVEEDEYAESPIGHPSALYPPENR 332
           LL  E+E  +      SA YPP+NR
Sbjct: 8   LLGSEEEGNQLNRSFYSASYPPQNR 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,273
Number of Sequences: 438
Number of extensions: 4025
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)