Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1061
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC167.04 |pam17||presequence translocase-associated motor subu...    26   6.5  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   8.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   8.6  

>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -1

Query: 305 NSKSYTFLFS*TVRNSNLINFFVASILKEKFLLCDNTYDLTSYIRYNTSDTPSKTITYIK 126
           N++ Y   F     N + +   V ++L +  +   +TY+ T+   +N++ TP  TIT  K
Sbjct: 140 NNQVYQVFFGVGNGNPSCVGIAVLAVLPQP-ISSSSTYNSTTSSYHNSTSTPPPTITSTK 198


>SPAC167.04 |pam17||presequence translocase-associated motor subunit
           Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 194 KYCHTVKTFLLECWPQKSLLNSNFELFMKIK 286
           K C+ VKT+  E   QK   + N+  F+K++
Sbjct: 25  KTCYNVKTYSTESIKQKKPQDLNWPTFLKLR 55


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 203 DNTYDLTSYIRYNTSDTPSKTITYIKL 123
           +NT DL  YIR +    PS    Y+KL
Sbjct: 347 NNTKDLHKYIRDSMIGLPSNLSDYVKL 373


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 233 SILKEKFLLCDNTYDLTSYIRYNTSDTPSKTITY 132
           SIL +K+L CD    +  + R+  S   S   TY
Sbjct: 295 SILSQKYLSCDLGIPIQEHKRFKQSPVASNMPTY 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,462
Number of Sequences: 5004
Number of extensions: 57216
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)