Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1061
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    30   1.7  
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185...    28   9.0  
02_02_0454 + 10436491-10436820,10437487-10437570,10437667-104377...    28   9.0  

>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -1

Query: 662 LRYARNPKSSFKTLFIVVLLNPI*RANSFCLRLGFL*IRTFTAFITA 522
           L Y +NPK   K + I+VL+ P+   NSF   L     +TF  F+ A
Sbjct: 43  LFYWKNPKEQ-KAILIIVLMAPLYAINSFVGLLDIKGSKTFFTFLDA 88


>11_01_0240 +
           1852186-1852371,1854183-1854237,1854391-1856267,
           1856342-1856500,1856692-1856863,1856965-1857263,
           1857539-1857844
          Length = 1017

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 600 VKQNHDEKGFK*RLRVSGISKKNRTSFE 683
           +   HD K  K    V GISKK R+SF+
Sbjct: 86  ITSKHDSKALKMHGGVDGISKKVRSSFD 113


>02_02_0454 +
           10436491-10436820,10437487-10437570,10437667-10437797,
           10437873-10437948,10438366-10438436,10438559-10438645,
           10438725-10438797,10438881-10438948,10439020-10439088,
           10439160-10439265,10439831-10439887,10440297-10440389
          Length = 414

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +1

Query: 310 SFLNMEWTLKEDRVAVIALHRCGYASIQIFNILKILNIT 426
           ++LN+ W ++   V V+A+ + G  S+Q+ ++  I+ +T
Sbjct: 301 TYLNLSWCVRVTDVGVVAIAQ-GCRSLQLLSLFGIVGVT 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,594,192
Number of Sequences: 37544
Number of extensions: 299304
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)