Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1061
         (740 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   2.6  
U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical pr...    28   6.0  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    28   8.0  

>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 724 KRGISSVSGPLDEHSNDVLFFFDMPETLSLHLKPFSSWFCLTLSEGPTVSAYV 566
           K G++SV  P+ EH  D+L   +    L LH +  +    +TL+  P  S Y+
Sbjct: 485 KEGVTSVGRPVAEHRPDILLSGE--AILELHCEFINEDGNVTLTMKPNASCYI 535


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 724 KRGISSVSGPLDEHSNDVLFFFDMPETLSLHLKPFSSWFCLTLSEGPTVSAYV 566
           K G++SV  P+ EH  D+L   +    L LH +  +    +TL+  P  S Y+
Sbjct: 485 KEGVTSVGRPVAEHRPDILLSGE--AILELHCEFINEDGNVTLTMKPNASCYI 535


>U28741-4|AAA68328.1|  747|Caenorhabditis elegans Hypothetical
           protein F35D2.4 protein.
          Length = 747

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 203 DNTYDLTSYIRYNTSDTPSKTITYIKLLIHF*SPN*RTRTAFILGRLYPMICKRSKLSF 27
           D++++L  + RY+ + T     T   + +HF   +      F+ GR Y   CK  K +F
Sbjct: 233 DSSFELF-FARYDVNGTFDGFFTSEDIFLHFCDDSLNPFAPFLFGRRYQKECKIRKATF 290


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 724 KRGISSVSGPLDEHSNDVLFFFDMPETLSLHLKPFSSWFCLTLSEGPTVSAYV 566
           K G++SV  P  EH  D+L   +    L LH +  +    +TL+  P  S Y+
Sbjct: 485 KEGVTSVGRPEAEHRPDILLSGE--AILELHCEFINEDGNVTLTMKPNASCYI 535


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,401,135
Number of Sequences: 27780
Number of extensions: 308646
Number of successful extensions: 638
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)