Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1060
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    25   5.9  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    25   5.9  
SPCC777.14 |prp4||serine/threonine protein kinase Prp4|Schizosac...    25   5.9  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    24   7.8  

>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 308 DITHLCFYKRIDLISCFSDQRIEYSGF 228
           DIT +  ++    +SC S +R+ YS F
Sbjct: 429 DITKIFDFETEQKLSCLSCKRVRYSSF 455


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 161 VTSKPQKEGLSCNLFRTEWLHNEIP 235
           + ++ Q  G++CNL+  E + N+ P
Sbjct: 212 IYNRLQANGIACNLYTGEEIRNDYP 236


>SPCC777.14 |prp4||serine/threonine protein kinase
           Prp4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 477

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 390 RPTKLQLPPREVRRRMKPVP 331
           +P K   P +++R R+K VP
Sbjct: 415 KPVKFSKPTKDIRSRLKEVP 434


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 378 LQLPPREVRRRMKPVPR 328
           L +PPREV+  M P P+
Sbjct: 597 LSIPPREVKCDMPPYPK 613


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,405
Number of Sequences: 5004
Number of extensions: 30103
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)