Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1060
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    31   0.26 
07_01_0387 + 2902957-2904705                                           29   1.1  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   3.2  
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    27   4.3  
02_04_0554 - 23831212-23832163,23833173-23833438,23833694-238337...    27   5.6  
02_04_0553 - 23808328-23809530                                         27   5.6  
08_01_1057 + 10761508-10761758,10762155-10762267,10762681-107627...    26   9.9  
02_04_0531 + 23707978-23709021                                         26   9.9  

>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -1

Query: 387 PTKLQLPPREVRRRMKPVPRLYRRL 313
           PT+ QLPP+E  RR+ P+PRL +R+
Sbjct: 200 PTEPQLPPKERERRV-PMPRLRKRI 223


>07_01_0387 + 2902957-2904705
          Length = 582

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 390 RPTKLQLPPREVRRRMKPVPRL 325
           RP ++  PP E RRRM P+ RL
Sbjct: 42  RPMRVSAPPVEPRRRMNPLQRL 63


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -2

Query: 332 PDCIGVSPDITHLCFYKRIDLISCFSD---QRIEYSGFRYAAIQ 210
           P  +G +P   H C Y R  L  CFSD    RI  S  +Y  I+
Sbjct: 185 PAMVGSTPFCDHQCGYWRGALYVCFSDCFVMRISPSDNKYRVIR 228


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 389  ALLSCNFLHERYAGV*SPSPDCIGVSPDITHLCFYKRI 276
            A ++C ++ + Y+ + S S DC  +  D+T L F K++
Sbjct: 3383 AKITCIYVSQPYSLIVSGSDDCSVILWDLTSLAFVKQL 3420


>02_04_0554 -
           23831212-23832163,23833173-23833438,23833694-23833748,
           23834384-23834436,23834512-23834588,23834730-23834862,
           23834958-23835098,23835840-23835960,23836137-23836242,
           23836523-23836592,23836716-23836885,23837253-23837277,
           23837662-23837777,23838926-23839217
          Length = 858

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 314 SPDITHLCFYKRIDLISCFSDQRIEYSGFRYAAIQ 210
           S D+  L  YK IDL+ C  D   + +  R+A  Q
Sbjct: 817 SQDLAELTGYKAIDLMGCVCDMYSQIACPRFALFQ 851


>02_04_0553 - 23808328-23809530
          Length = 400

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 314 SPDITHLCFYKRIDLISCFSDQRIEYSGFRYAAIQ 210
           S D+  L  YK IDL+ C  D   + +  R+A  Q
Sbjct: 359 SQDLAELTGYKAIDLMGCVCDMYSQIACPRFALFQ 393


>08_01_1057 +
           10761508-10761758,10762155-10762267,10762681-10762733,
           10763892-10764248
          Length = 257

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 11/17 (64%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
 Frame = -1

Query: 237 FGISL-CSHSVLNKLHD 190
           FG+SL CSHSV+ + HD
Sbjct: 83  FGLSLFCSHSVVTRKHD 99


>02_04_0531 + 23707978-23709021
          Length = 347

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 314 SPDITHLCFYKRIDLISCFSDQRIEYSGFRYAAIQ 210
           S D+  L  YK IDL+ C  D   + +  R+A +Q
Sbjct: 306 SNDLAELTGYKAIDLMGCVCDIYSQIACPRFALLQ 340


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,236,850
Number of Sequences: 37544
Number of extensions: 192009
Number of successful extensions: 407
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)