Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1060
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    26   9.0  

>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/50 (22%), Positives = 23/50 (46%)
 Frame = -2

Query: 299 HLCFYKRIDLISCFSDQRIEYSGFRYAAIQS*TSCTTILPSEASRSLAGY 150
           H   Y  +D+++   +   EYSG  +  +        ++   ASR++A +
Sbjct: 126 HKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLITETASRNVASF 175


>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 373 TSSTRGTPAYEARPPTVSASHPT 305
           T ST+G P   +  PT S S+PT
Sbjct: 484 TPSTQGVPTSTSNQPTPSTSNPT 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,742,841
Number of Sequences: 27780
Number of extensions: 164385
Number of successful extensions: 270
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)