Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1060
         (405 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07691.1 68415.m00941 hypothetical protein                          29   1.2  
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA...    26   8.3  
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA...    26   8.3  
At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to...    26   8.3  

>At2g07691.1 68415.m00941 hypothetical protein
          Length = 136

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = -1

Query: 402 KLQFRPTKLQLPPREVRRRMKPVPRLYRRLTRHNALVFL*EDRSYILL----Q*SENRIF 235
           K + +P +LQLPP++V    +     Y    R+    +L   RSY LL      S ++ F
Sbjct: 3   KRKLKPKRLQLPPQDVVFEGEAAMNEY-TFYRNWVESWLQHIRSYYLLFIDGDPSLSKFF 61

Query: 234 GISLCSHSVLNKLHDNPSF 178
            I +C+HS      D   F
Sbjct: 62  EIEICAHSWKRSTFDQQVF 80


>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
           GI:3021506
          Length = 374

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 287 YKRIDLISCFSDQRIEYSGFRYAAIQS*TSCTTILPSEASRSLAGY 150
           Y  +DLI+   +   EYSG  +  ++       I+  +AS  +A Y
Sbjct: 149 YDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEY 194


>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
           isocitrate dehydrogenase, putative strong similarity to
           isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
           [Nicotiana tabacum]
          Length = 374

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -2

Query: 287 YKRIDLISCFSDQRIEYSGFRYAAIQS*TSCTTILPSEASRSLAGY 150
           Y  +DLI+   +   EYSG  +  ++       I+  +AS  +A Y
Sbjct: 149 YDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEY 194


>At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 374

 Score = 26.2 bits (55), Expect = 8.3
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -2

Query: 317 VSPDITHLCFYK--RIDLISCFSDQRIEYSGFRYAAIQS*TSCTTILPSEA 171
           + P +T   F+K   + L+    DQ + Y+G +Y +     + T +LP+ A
Sbjct: 62  IRPKMTLSIFFKILLLGLLEPTIDQNLYYTGMKYTSATFTAAMTNVLPAFA 112


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,281,706
Number of Sequences: 28952
Number of extensions: 155586
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)