Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1059
         (396 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   1.9  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   3.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   4.4  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   5.9  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   5.9  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   5.9  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -3

Query: 232 RYRN*PDKSLHQLRTAMHHH 173
           R RN PD S H LR+    H
Sbjct: 53  RLRNVPDNSFHFLRSLKKVH 72


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 13/48 (27%), Positives = 18/48 (37%)
 Frame = -2

Query: 200 PTKNGHAPPPTESRKSC*SVNPSGVRAW*DFPC*VKLSRRLHCLVVPF 57
           P  N H    T   K C  V  + +  W      ++  +RL C   PF
Sbjct: 191 PKVNSHGKIKTFKCKQCDFVAITKLEQWNHSKVHIREDKRLTCPKCPF 238


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 217 PDKSLHQLRTAMHHHPPNQERAVNLSIL 134
           P +S H+L T +  +PPN   AV  S L
Sbjct: 44  PLESNHKLVTFILKNPPNLNPAVQGSSL 71


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 172 PPNQERAVNLSILPVSGP 119
           PPN   AV   +LPV  P
Sbjct: 351 PPNPLDAVTSGLLPVRPP 368


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 108 PVLSQIKPQAPLPGGALPSIP 46
           P   QIKPQ+P     +  IP
Sbjct: 17  PHRMQIKPQSPSSSSRILDIP 37


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 108 PVLSQIKPQAPLPGGALPSIP 46
           P   QIKPQ+P     +  IP
Sbjct: 17  PHRMQIKPQSPSSSSRILDIP 37


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,734
Number of Sequences: 336
Number of extensions: 1895
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8435920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)