Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1059
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.35 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    28   0.46 
SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr 3|...    27   1.4  
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   1.8  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   2.4  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   2.4  
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    25   5.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    24   7.4  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    24   7.4  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    24   9.8  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    24   9.8  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    24   9.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   9.8  

>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.35
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 166 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 309
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 165 IKKELLICQSFRCPGLVRFPVLSQIKPQAPLPGGALPSIPLSFSFAT 25
           I K+LL  +SFR P LV      +I   + L    LPS P +  F++
Sbjct: 328 ISKDLLEYKSFRIPPLVEAAESEKISQLSTLEKRTLPSFPYNPFFSS 374


>SPCC4G3.03 |||WD repeat protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 347

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
 Frame = -3

Query: 169 PNQERAVN----LSILPVSGPGEISRVESN*AAGSTAWWCPSVNSFKFQLCNHTPPGVQ 5
           PN E+ V     LS  P+S  G+   + +    G   +W P+      +LC+    G++
Sbjct: 62  PNSEKVVQVGQGLSFKPLSLLGKCGYIAAGGQLGEFDYWSPTSKQTHMKLCDQHNNGIE 120


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 145 LSILPVSGPGEISRVESN*AAGSTAW 68
           +SIL V+GP +  R+  +   G T W
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLW 239


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -1

Query: 108 PVLSQIKPQAP--LPGGALPSIPLSFSFATILPPES 7
           P    + P AP  LP  A PS+P+    A  LPP +
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 214  DKSLHQLRTAMHHHPPNQERAVNLSILPV 128
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 180 TTTHRIKKELLICQSFRCPGLVRFPVLSQIKP 85
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 208 ICLVNSGNERDSSLLNRRRYL 270
           +CL N    +D  LLNR RY+
Sbjct: 227 LCLWNHAYYKDYGLLNRSRYI 247


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 117 VRFPVLSQIKPQAPLPGGALPSI 49
           V  P+++++  QAP+ GG+  SI
Sbjct: 115 VNAPIVNEVSLQAPMKGGSHSSI 137


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 58  SVNSFKFQLCNHTPPGVQN 2
           +V +++FQ+ NHTP  + N
Sbjct: 77  TVWAYRFQILNHTPSYIDN 95


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = -1

Query: 126 PGLVRFPVLS---QIKPQAPLPGGALPSIPLSFS-FATILPPESKM 1
           P     PVLS   Q K Q P+P    P +P+  S F+  L P +++
Sbjct: 353 PAAQASPVLSTTTQPKVQKPVPKAFQPKVPMEISPFSGELVPATEL 398


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 109 KSHQARTPEGLTD*QLFLDSVGGGAWPFLV 198
           K+H+A++ EGL+     L SVG  ++ F +
Sbjct: 199 KNHKAKSTEGLSIIFFVLASVGNTSYAFSI 228


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 111 FPVLSQIKPQAPL 73
           FPVL QI+P  PL
Sbjct: 441 FPVLPQIRPSTPL 453


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -1

Query: 108  PVLSQIKPQAPLPGGALPSIPLSFSFATILPPES 7
            P LS   P  PLP    P IP+  +   +  P S
Sbjct: 1015 PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTS 1048


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,269
Number of Sequences: 5004
Number of extensions: 30066
Number of successful extensions: 79
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)