Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1059
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0130 - 963856-965454                                             28   2.4  
05_05_0213 + 23307403-23307573,23308691-23308810                       27   5.5  
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686...    27   7.2  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    27   7.2  
05_06_0282 + 26915249-26915881                                         27   7.2  
03_02_0155 - 5974118-5974173,5974242-5974314,5974393-5974500,597...    27   7.2  
10_05_0082 - 8916831-8917738,8919919-8920108                           26   9.6  
01_06_0540 + 30084698-30086211,30086422-30086485,30086667-30086771     26   9.6  
01_06_0536 + 30068881-30070383                                         26   9.6  

>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 202 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 104
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


>05_05_0213 + 23307403-23307573,23308691-23308810
          Length = 96

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -1

Query: 387 LRASQTCYCSISCGSK--TPVPLRRILIRRQ*VARHEAAHT*IT-TPI 253
           LRAS  C CS++ GS+  TP P  +  +R     R EA +T  T TP+
Sbjct: 42  LRASVCCRCSVAAGSQNITPFPDLKFELR----TRQEAKNTLNTCTPL 85


>09_06_0317 -
           22265786-22267618,22267874-22268446,22268546-22268677,
           22268931-22269137,22269287-22269388,22270742-22271032
          Length = 1045

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 102 LSQIKPQAPLPGGALPSIPLSFSFAT 25
           L+ ++ Q PLP G  P +  SFS A+
Sbjct: 708 LASLRAQPPLPSGPPPHVSTSFSAAS 733


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 146 INSSFLIRWVVVHGRS*LVERFVWLIPVTN 235
           +N+S L RW ++  R  LV R + L PVT+
Sbjct: 792 VNASGLTRWALLLSRLLLVLRHMLLYPVTH 821


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 215 RQIAPPTKNGHAPPPTESRKS 153
           RQ+APP   G+ PP T  R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176


>03_02_0155 -
           5974118-5974173,5974242-5974314,5974393-5974500,
           5975189-5976914,5977065-5977620,5978008-5978485
          Length = 998

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
 Frame = -1

Query: 96  QIKPQAPLPGGALPSIPLSFSFA--TILPPES 7
           Q  PQ P+PG   P  P   SFA    LPP S
Sbjct: 58  QAHPQYPMPGSLPPPPPRPPSFAPENALPPSS 89


>10_05_0082 - 8916831-8917738,8919919-8920108
          Length = 365

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 156 ELLICQSFRCPGLVRFPVLSQIKPQAPLPGGALPSIPL 43
           + ++C SFR      F    +I P  PL  G  P +P+
Sbjct: 115 DYILCNSFRGAEAATFARFPKILPVGPLLTGERPGMPV 152


>01_06_0540 + 30084698-30086211,30086422-30086485,30086667-30086771
          Length = 560

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 175 HPPNQERAVNLSILPVSGPGEISR 104
           HPP  E  ++  +LP+ GPG + +
Sbjct: 191 HPPGGEEVID--VLPIIGPGRVGK 212


>01_06_0536 + 30068881-30070383
          Length = 500

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 169 PNQERAVNLSILPVSGPGEISR 104
           PN   A  +++LP+ GPG + +
Sbjct: 190 PNHPSAKGINVLPIIGPGRVGK 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,273,588
Number of Sequences: 37544
Number of extensions: 267398
Number of successful extensions: 762
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)