Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1059
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   2.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   2.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   2.9  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.8  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 127 SGPGEISRVESN*AAGSTAWWCPSVNS 47
           SGP E+ R +   A   T   CP V S
Sbjct: 44  SGPNELGRFKHTDACCRTHDMCPDVMS 70


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 127 SGPGEISRVESN*AAGSTAWWCPSVNS 47
           SGP E+ R +   A   T   CP V S
Sbjct: 49  SGPNELGRFKHTDACCRTHDMCPDVMS 75


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 127 SGPGEISRVESN*AAGSTAWWCPSVNS 47
           SGP E+ R +   A   T   CP V S
Sbjct: 49  SGPNELGRFKHTDACCRTHDMCPDVMS 75


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 215 RQIAPPTKNGHAPPPTESRKS 153
           RQ+    + GH  PP +  +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRS 285


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,296
Number of Sequences: 438
Number of extensions: 2434
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)