Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1058
         (477 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.15 
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   1.4  
UniRef50_Q8TR44 Cluster: CODH nickel-insertion accessory protein...    33   2.5  
UniRef50_Q4A674 Cluster: Putative uncharacterized protein; n=2; ...    32   5.7  
UniRef50_A7H0B9 Cluster: Putative uncharacterized protein; n=3; ...    32   5.7  
UniRef50_Q97BY1 Cluster: Alkaline phosphatase; n=2; Thermoplasma...    31   10.0 

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.15
 Identities = 20/38 (52%), Positives = 24/38 (63%)
 Frame = -2

Query: 467 F*LLRWVRKLIAHVVLSGYRSPYTSTR*MPPSTWRHEF 354
           F LLRWV +L AH+VLSGY SP        P T R++F
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSPRHLYDVNAPPTSRYKF 191


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 34.3 bits (75), Expect = 1.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -2

Query: 302 QVSWWYLPMRTHKTSYY 252
           +  WWYLP RTHK SY+
Sbjct: 568 RAEWWYLPARTHKRSYH 584


>UniRef50_Q8TR44 Cluster: CODH nickel-insertion accessory protein;
           n=3; Methanosarcinaceae|Rep: CODH nickel-insertion
           accessory protein - Methanosarcina acetivorans
          Length = 254

 Score = 33.5 bits (73), Expect = 2.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 54  GSRGLKDKMSGAFVFSDA-TVFESRWQVQIFPMKYVLNK 167
           G R L +K+ GA+   D  ++FE++WQ+   P  Y + K
Sbjct: 61  GKRNLGEKLMGAYQRGDTLSLFENKWQISDIPEAYTVKK 99


>UniRef50_Q4A674 Cluster: Putative uncharacterized protein; n=2;
           Mycoplasma synoviae 53|Rep: Putative uncharacterized
           protein - Mycoplasma synoviae (strain 53)
          Length = 249

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 12/31 (38%), Positives = 24/31 (77%)
 Frame = -2

Query: 332 LKRITASRHKQVSWWYLPMRTHKTSYYE*LR 240
           LK+++ S +  +S++Y  ++THK+S+YE L+
Sbjct: 166 LKKVSDSFNNYISYYYQIIKTHKSSFYETLK 196


>UniRef50_A7H0B9 Cluster: Putative uncharacterized protein; n=3;
           Campylobacter|Rep: Putative uncharacterized protein -
           Campylobacter curvus 525.92
          Length = 356

 Score = 32.3 bits (70), Expect = 5.7
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -3

Query: 322 LLLHGINR*VGGTYPCGLTRRPTTSNCAIYNFTGLIFITRCYSFTLEVNREHLLR 158
           +L   I   V G Y  G   +P T N  ++NF G++    C+S +     +HL++
Sbjct: 239 ILFASIANLVLGQYKFGFEGQPITHNDFVWNFLGMVLAGLCFSLSEGCPGKHLVQ 293


>UniRef50_Q97BY1 Cluster: Alkaline phosphatase; n=2;
           Thermoplasma|Rep: Alkaline phosphatase - Thermoplasma
           volcanium
          Length = 272

 Score = 31.5 bits (68), Expect = 10.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = -2

Query: 230 FYGFDFYYTMLFLHLGSQS*TFVKDVFHWKNLYLPAGFEHRCIAKYECTGH 78
           +Y + F +++L L   + S T     FH+ N+Y    ++H+ +A +  TG+
Sbjct: 39  YYYYAFIFSILILFASAVSIT--NGYFHYVNVYSYYSYQHKILAPFSLTGY 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 506,893,484
Number of Sequences: 1657284
Number of extensions: 10256934
Number of successful extensions: 18827
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18826
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26870548160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)