Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1058
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0240 - 1749674-1750514,1751157-1752040                           28   3.4  
01_01_0534 + 3920356-3920867,3921141-3922134                           27   5.9  
01_01_0535 + 3923433-3923932,3924105-3925098                           27   7.8  
01_01_0533 + 3917101-3917603,3918312-3919305                           27   7.8  

>07_01_0240 - 1749674-1750514,1751157-1752040
          Length = 574

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 279 HADSQDVLLRVIAQFIILRV*FLLHDVIPSPWKSIVNIC 163
           H   +DV L   A F +LR  F    ++ +PWK  +N+C
Sbjct: 273 HKQLKDVCLS-FALFKLLRCRFASCKLVNNPWKDNINLC 310


>01_01_0534 + 3920356-3920867,3921141-3922134
          Length = 501

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 RTYFIGKICTCQRDSNTVASLNTNA 86
           + + IG +C C RD NT+A+    A
Sbjct: 254 KVWTIGPMCLCHRDRNTMAARGNKA 278


>01_01_0535 + 3923433-3923932,3924105-3925098
          Length = 497

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 RTYFIGKICTCQRDSNTVASLNTNA 86
           + + IG +C C RDSN +A+    A
Sbjct: 250 KVWTIGPMCLCDRDSNMMAARGNKA 274


>01_01_0533 + 3917101-3917603,3918312-3919305
          Length = 498

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 160 RTYFIGKICTCQRDSNTVASLNTNA 86
           + + IG +C C RDSN +A+    A
Sbjct: 251 KIWTIGPMCLCHRDSNAMAARGNKA 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,713
Number of Sequences: 37544
Number of extensions: 279237
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)