Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1058
         (477 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.3  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   5.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   5.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.0  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 158 DVFHWKNLYLPAG 120
           D  HW+  YLPAG
Sbjct: 4   DSIHWEARYLPAG 16


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 226 TGLIFITRCYSFTLEVNREHLLRTYFIGKICTCQRDS 116
           +G I +T+C  F     +  +  T    K C C R+S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = -3

Query: 226 TGLIFITRCYSFTLEVNREHLLRTYFIGKICTCQRDS 116
           +G I +T+C  F     +  +  T    K C C R+S
Sbjct: 61  SGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 468 FLIASMGSQAHSPRGIKWLSEPLYFYKV 385
           FL+  +  + + PR IKW +     +K+
Sbjct: 463 FLLKLLQDREYCPRYIKWTNRERGVFKL 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,159
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)