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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1057
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos...    25   2.3  
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi...    25   2.3  
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos...    25   2.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   3.0  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   3.0  
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch...    24   5.3  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    24   5.3  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    24   7.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    23   9.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    23   9.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    23   9.2  

>SPAC212.01c |||S. pombe specific DUF999 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGGTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
           10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGGTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPAC750.06c |||S. pombe specific DUF999 protein family
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +3

Query: 36  IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
           I A L  ++A+   ++    +    + YF +WA+Y+  +   G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249

Query: 207 FIGGTEKSSEVLI 245
             G T   SE  +
Sbjct: 250 HNGETALHSETTV 262


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 195 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALC 94
           SGY +  R C RCH+ R+++    N+  + R   C
Sbjct: 92  SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFC 125


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 225 KSSEVLIIDPELDVDKSGFRNFTSLRSK 308
           KS + L  DP L+  K+GF  F S  SK
Sbjct: 530 KSVKTLQADPSLEFAKAGFEIFPSNLSK 557


>SPCC1442.09 |trp3||anthranilate synthase component
           I|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 489

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 132 VYRPGVGRYGIEDIPVDLC 188
           +Y   VGR+G ED  +D C
Sbjct: 411 IYAGAVGRWGYEDDNMDTC 429


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 121 VIGRCTDPASDVMASKTSPWI 183
           V    T+PAS++  S+  PW+
Sbjct: 604 VYNLATNPASEISVSELRPWV 624


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
 Frame = +3

Query: 102 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGGTEKSSEVLIIDPELDVDKSG 278
           R +  F NW + RP    Y I +    L  +L     +   EK    ++++  +  D+  
Sbjct: 28  RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87

Query: 279 FRNF 290
           F  F
Sbjct: 88  FVQF 91


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 159 HNVRRRVGTPPNY 121
           H VR +V  PPNY
Sbjct: 165 HQVRHQVSIPPNY 177


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 973

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 215  ANKGINQVGTQIHGDVFDAITSDAGSVHRPITEVTNDARSAV 90
            A+ GI    T  H D+ +A  +++  V +  T V N+A  AV
Sbjct: 892  ASAGIQS--TLKHDDIMEASQTESILVEKEATRVANEALRAV 931


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 197 QVGTQIHGDVFDAITSDAGSVHRPITE 117
           Q  ++I G   ++  S  GSVH PI E
Sbjct: 30  QKSSKIVGSFTNSQNSSVGSVHSPILE 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,094
Number of Sequences: 5004
Number of extensions: 26612
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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