BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ceN-1057 (332 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 2.3 SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 2.3 SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 25 2.3 SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 3.0 SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 3.0 SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 24 5.3 SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 24 5.3 SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 24 7.0 SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 23 9.2 SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 9.2 SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 9.2 >SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizosaccharomyces pombe|chr 1|||Manual Length = 280 Score = 25.4 bits (53), Expect = 2.3 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206 I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + + Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249 Query: 207 FIGGTEKSSEVLI 245 G T SE + Sbjct: 250 HNGETALHSETTV 262 >SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schizosaccharomyces pombe|chr 2|||Manual Length = 280 Score = 25.4 bits (53), Expect = 2.3 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206 I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + + Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249 Query: 207 FIGGTEKSSEVLI 245 G T SE + Sbjct: 250 HNGETALHSETTV 262 >SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizosaccharomyces pombe|chr 1|||Manual Length = 280 Score = 25.4 bits (53), Expect = 2.3 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Frame = +3 Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206 I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + + Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249 Query: 207 FIGGTEKSSEVLI 245 G T SE + Sbjct: 250 HNGETALHSETTV 262 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 25.0 bits (52), Expect = 3.0 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -3 Query: 195 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALC 94 SGY + R C RCH+ R+++ N+ + R C Sbjct: 92 SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFC 125 >SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Schizosaccharomyces pombe|chr 2|||Manual Length = 651 Score = 25.0 bits (52), Expect = 3.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = +3 Query: 225 KSSEVLIIDPELDVDKSGFRNFTSLRSK 308 KS + L DP L+ K+GF F S SK Sbjct: 530 KSVKTLQADPSLEFAKAGFEIFPSNLSK 557 >SPCC1442.09 |trp3||anthranilate synthase component I|Schizosaccharomyces pombe|chr 3|||Manual Length = 489 Score = 24.2 bits (50), Expect = 5.3 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = +3 Query: 132 VYRPGVGRYGIEDIPVDLC 188 +Y VGR+G ED +D C Sbjct: 411 IYAGAVGRWGYEDDNMDTC 429 >SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 715 Score = 24.2 bits (50), Expect = 5.3 Identities = 8/21 (38%), Positives = 13/21 (61%) Frame = +1 Query: 121 VIGRCTDPASDVMASKTSPWI 183 V T+PAS++ S+ PW+ Sbjct: 604 VYNLATNPASEISVSELRPWV 624 >SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Schizosaccharomyces pombe|chr 1|||Manual Length = 729 Score = 23.8 bits (49), Expect = 7.0 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Frame = +3 Query: 102 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGGTEKSSEVLIIDPELDVDKSG 278 R + F NW + RP Y I + L +L + EK ++++ + D+ Sbjct: 28 RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87 Query: 279 FRNF 290 F F Sbjct: 88 FVQF 91 >SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1117 Score = 23.4 bits (48), Expect = 9.2 Identities = 8/13 (61%), Positives = 9/13 (69%) Frame = -3 Query: 159 HNVRRRVGTPPNY 121 H VR +V PPNY Sbjct: 165 HQVRHQVSIPPNY 177 >SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces pombe|chr 3|||Manual Length = 973 Score = 23.4 bits (48), Expect = 9.2 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = -1 Query: 215 ANKGINQVGTQIHGDVFDAITSDAGSVHRPITEVTNDARSAV 90 A+ GI T H D+ +A +++ V + T V N+A AV Sbjct: 892 ASAGIQS--TLKHDDIMEASQTESILVEKEATRVANEALRAV 931 >SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1639 Score = 23.4 bits (48), Expect = 9.2 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -1 Query: 197 QVGTQIHGDVFDAITSDAGSVHRPITE 117 Q ++I G ++ S GSVH PI E Sbjct: 30 QKSSKIVGSFTNSQNSSVGSVHSPILE 56 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,424,094 Number of Sequences: 5004 Number of extensions: 26612 Number of successful extensions: 66 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 66 length of database: 2,362,478 effective HSP length: 64 effective length of database: 2,042,222 effective search space used: 93942212 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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