Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1057
(332 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.01c |||S. pombe specific DUF999 family protein 2|Schizos... 25 2.3
SPBCPT2R1.04c |||S. pombe specific DUF999 protein family 10|Schi... 25 2.3
SPAC750.06c |||S. pombe specific DUF999 protein family 4|Schizos... 25 2.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 3.0
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 25 3.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 24 5.3
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce... 24 5.3
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 24 7.0
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 23 9.2
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 9.2
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 23 9.2
>SPAC212.01c |||S. pombe specific DUF999 family protein
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 2.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 207 FIGGTEKSSEVLI 245
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPBCPT2R1.04c |||S. pombe specific DUF999 protein family
10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 2.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 207 FIGGTEKSSEVLI 245
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPAC750.06c |||S. pombe specific DUF999 protein family
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 2.3
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +3
Query: 36 IFATLA-VLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI-PVDLC-THLIYS 206
I A L ++A+ ++ + + YF +WA+Y+ + G + + P D+C ++ + +
Sbjct: 190 IIAVLGMIIAALGMIIAALGATITGLLYFGHWALYKLVILSLGFKIVTPGDVCVSNTLPT 249
Query: 207 FIGGTEKSSEVLI 245
G T SE +
Sbjct: 250 HNGETALHSETTV 262
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 195 SGYTN-PRGCLRCHNVRRRVGTPPNY*SNKRCALC 94
SGY + R C RCH+ R+++ N+ + R C
Sbjct: 92 SGYDSYHRECFRCHDCRKQI-IDSNFKRDNRTIFC 125
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 225 KSSEVLIIDPELDVDKSGFRNFTSLRSK 308
KS + L DP L+ K+GF F S SK
Sbjct: 530 KSVKTLQADPSLEFAKAGFEIFPSNLSK 557
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 24.2 bits (50), Expect = 5.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +3
Query: 132 VYRPGVGRYGIEDIPVDLC 188
+Y VGR+G ED +D C
Sbjct: 411 IYAGAVGRWGYEDDNMDTC 429
>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 715
Score = 24.2 bits (50), Expect = 5.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 121 VIGRCTDPASDVMASKTSPWI 183
V T+PAS++ S+ PW+
Sbjct: 604 VYNLATNPASEISVSELRPWV 624
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 23.8 bits (49), Expect = 7.0
Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 102 RIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLI-YSFIGGTEKSSEVLIIDPELDVDKSG 278
R + F NW + RP Y I + L +L + EK ++++ + D+
Sbjct: 28 RYIVPFKNWVIGRPDRKEYAIRNGAPKLLLNLFSLENLSMNEKYQVFVVLNSLMSEDQDP 87
Query: 279 FRNF 290
F F
Sbjct: 88 FVQF 91
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 23.4 bits (48), Expect = 9.2
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 159 HNVRRRVGTPPNY 121
H VR +V PPNY
Sbjct: 165 HQVRHQVSIPPNY 177
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 9.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -1
Query: 215 ANKGINQVGTQIHGDVFDAITSDAGSVHRPITEVTNDARSAV 90
A+ GI T H D+ +A +++ V + T V N+A AV
Sbjct: 892 ASAGIQS--TLKHDDIMEASQTESILVEKEATRVANEALRAV 931
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 23.4 bits (48), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 197 QVGTQIHGDVFDAITSDAGSVHRPITE 117
Q ++I G ++ S GSVH PI E
Sbjct: 30 QKSSKIVGSFTNSQNSSVGSVHSPILE 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,424,094
Number of Sequences: 5004
Number of extensions: 26612
Number of successful extensions: 66
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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