Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1057
         (332 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0339 - 24513699-24516827                                         27   3.7  
07_01_1176 + 11122801-11123115                                         26   6.4  
03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636     26   6.4  
03_02_0873 - 11991947-11992059,11992148-11992337,11992437-119926...    26   6.4  
05_03_0146 + 8883761-8883860,8886000-8886086,8886574-8886684,888...    26   8.5  
02_02_0060 + 6446317-6446871,6447836-6448276,6449035-6449265,644...    26   8.5  
02_02_0058 - 6423776-6423850,6424302-6424379,6426096-6426156,642...    26   8.5  

>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 159  GIEDIPVDLCTHLIYSFIGGTEKSS--EVLIIDP--ELDVDKSGFRNFTSLRSKH 311
            GIE++ +  CT LI S   G +  S    L I     L+      +NFTSLRS H
Sbjct: 965  GIEELHISRCTELI-SLPHGMQHLSFLRTLTITECTNLETFPEWLKNFTSLRSLH 1018


>07_01_1176 + 11122801-11123115
          Length = 104

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 30  RAIFATLAVLASCAALVQCADSRARIVCYFSN 125
           +A+   + V+A  AAL+  A + AR VC  SN
Sbjct: 3   KAVALAVLVVAVAAALLAVAPAPARAVCNMSN 34


>03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636
          Length = 369

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)
 Frame = -3

Query: 180 PRGCLRCHNVRRRVGTPPNY*SNKRCALCCPHTELMRRNSPG 55
           PRG   C      +  PP   S  RCALC   T + RR   G
Sbjct: 7   PRGTAWCGGCGAYLAVPPGARS-VRCALCRAVTRVERRGHHG 47


>03_02_0873 -
           11991947-11992059,11992148-11992337,11992437-11992654,
           11993409-11993503,11994201-11994406,11994658-11994750,
           11994904-11994960,11995070-11995198,11996377-11996745
          Length = 489

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +3

Query: 216 GTEKSSEVLIIDPELDVDKSGFRN 287
           GTEKS E+L    +L  DKS FR+
Sbjct: 175 GTEKSEEILQAVRDLLQDKSSFRS 198


>05_03_0146 +
           8883761-8883860,8886000-8886086,8886574-8886684,
           8887021-8887121,8887208-8887258,8887347-8887496,
           8887577-8887639,8887728-8887814,8887908-8888018,
           8888097-8888387,8889372-8889815
          Length = 531

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 149 DAGSVHRPITEVTNDARSAVRTLN*C 72
           ++G V+  ITEV ND   A +  N C
Sbjct: 252 NSGQVNEEITEVRNDTEGAQKVQNNC 277


>02_02_0060 +
           6446317-6446871,6447836-6448276,6449035-6449265,
           6449382-6449473,6449555-6449615,6451541-6451618,
           6451853-6452014
          Length = 539

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 72  ALVQCADSRARIVCYFSNWAVYRPGVGRY 158
           A   C D++ R VCYF     Y P VG Y
Sbjct: 14  ASASCGDAQKRRVCYF-----YDPEVGNY 37


>02_02_0058 -
           6423776-6423850,6424302-6424379,6426096-6426156,
           6426239-6426330,6426440-6426670,6427510-6427950,
           6429037-6429591
          Length = 510

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 72  ALVQCADSRARIVCYFSNWAVYRPGVGRY 158
           A   C D++ R VCYF     Y P VG Y
Sbjct: 14  ASASCGDAQKRRVCYF-----YDPEVGNY 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,947,875
Number of Sequences: 37544
Number of extensions: 196519
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)