Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1057
(332 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 64 3e-11
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 53 5e-08
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 4e-06
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 6e-06
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047) 28 2.2
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 26 6.6
SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9) 26 8.8
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011) 26 8.8
SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 270
Score = 64.1 bits (149), Expect = 3e-11
Identities = 37/94 (39%), Positives = 53/94 (56%)
Frame = +3
Query: 45 TLAVLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGGTE 224
TL VLA A CA VCY +NW+ YR G ++ EDIP DLCTHL+YSF +
Sbjct: 5 TLLVLAVAA----CATGNYVRVCYHTNWSQYRQGRAKFWPEDIPADLCTHLMYSFAKINQ 60
Query: 225 KSSEVLIIDPELDVDKSGFRNFTSLRSKHPDVSS 326
K+ + E + DK + F +L+ K+P++ +
Sbjct: 61 KNELAMY---EWNDDKL-YPRFNALKQKNPELKT 90
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 53.2 bits (122), Expect = 5e-08
Identities = 31/69 (44%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +3
Query: 6 DEP*PLKMRAIFA-TLAVLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDIPVD 182
D P P I A LA+L C V A S VCY++NW+ YRP G + EDI
Sbjct: 376 DGPLPPNTSLIMARVLAILILC--FVPFAVSEYVRVCYYTNWSQYRPKGGTFWPEDIDPH 433
Query: 183 LCTHLIYSF 209
LCTH+I+SF
Sbjct: 434 LCTHVIHSF 442
Score = 46.4 bits (105), Expect = 6e-06
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 111 CYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSF 209
CY++NW+ YRP G + EDI LCTH+++SF
Sbjct: 25 CYYTNWSQYRPKGGTFWPEDIDPFLCTHILFSF 57
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 46.8 bits (106), Expect = 4e-06
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 108 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSF 209
VCYF+NWA YRP ++ +DI LCTH++Y+F
Sbjct: 401 VCYFTNWAQYRPDPVKFLPKDIDPLLCTHIVYAF 434
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 46.4 bits (105), Expect = 6e-06
Identities = 18/48 (37%), Positives = 32/48 (66%)
Frame = +3
Query: 108 VCYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGGTEKSSEVLIID 251
VCY++NWA YR G+ +Y ++I LCTH++Y+F +S++ + +
Sbjct: 25 VCYYTNWAQYR-GLAKYTPDNIDPSLCTHIVYAFAKMNADNSKLAMFE 71
>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 76 NAAQLARTANV-ANIARIFNGYGSSV 2
N+ Q AR A+ A+IA +FNGY SSV
Sbjct: 1439 NSTQPARLASTPASIASLFNGYFSSV 1464
>SB_20796| Best HMM Match : RVT_1 (HMM E-Value=0.047)
Length = 660
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -2
Query: 76 NAAQLARTANV-ANIARIFNGYGSSV 2
N+ Q AR A+ A+IA +FNGY SSV
Sbjct: 350 NSTQPARLASTPASIASLFNGYFSSV 375
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 69 AALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDI 173
A LV C + V Y NW + PG G ++++
Sbjct: 824 AGLVTCRMLGYKYVYYSGNWGLVHPGSGDIWLDNV 858
>SB_44212| Best HMM Match : DUF1071 (HMM E-Value=5.9)
Length = 274
Score = 25.8 bits (54), Expect = 8.8
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 207 RNKSSGYTNPRGCLRCHNVRRRVGTPPN 124
++K SG+T PR L RR GT PN
Sbjct: 218 KDKKSGFTPPRLTLPSLWALRRTGTIPN 245
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 25.8 bits (54), Expect = 8.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 170 VFDAITSDAGSVHRPITEVTNDARSAVRTLN 78
+F AITSD RP T N A +A+ T+N
Sbjct: 913 IFQAITSDIFVYRRPSTSPINPA-TAIPTIN 942
>SB_50829| Best HMM Match : Phage_integrase (HMM E-Value=0.011)
Length = 337
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 84 TELMRRNSPGQPTSQISLAFSTVTVRPC 1
TEL++++ PG+P ++L TV R C
Sbjct: 216 TELVKQSRPGRPQPVLTLPSFTVDKRLC 243
>SB_29192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 695
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 185 VYPLDLFLYWRHREIKRSSHYRS 253
VY FLY+RH+ +K + ++S
Sbjct: 67 VYVPQFFLYYRHKALKNTCEHKS 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,221,791
Number of Sequences: 59808
Number of extensions: 225950
Number of successful extensions: 525
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 475580678
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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