Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1057
         (332 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    46   9e-06
AF026152-1|AAB81847.1|  117|Caenorhabditis elegans chitinase pro...    34   0.028
AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical ...    31   0.26 
Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical pr...    29   0.81 
Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical pr...    29   0.81 
U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal pro...    27   3.3  
U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical p...    27   4.3  
U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical p...    27   4.3  
U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 45.6 bits (103), Expect = 9e-06
 Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +3

Query: 111 CYFSNWAVYRPGVGRYGIEDIPVDLCTHLIYSFIGGTEKSSEVLIIDP-ELDVDKSG 278
           CYF+NWA YR G  ++  ED    LCTH++++F G       V   DP +L  D +G
Sbjct: 57  CYFTNWAQYRQGRAKFVPEDYTPGLCTHILFAF-GWMNADYTVRAYDPADLPNDWAG 112


>AF026152-1|AAB81847.1|  117|Caenorhabditis elegans chitinase
           protein.
          Length = 117

 Score = 33.9 bits (74), Expect = 0.028
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 126 WAVYRPGVGRYGIEDIPVDLCTHLIYSFIGGTEKSSEVLIIDP-ELDVDKSG 278
           WA YR G  ++  ED    LCTH++++F G       V   DP +L  D +G
Sbjct: 1   WAQYRQGRAKFVPEDYTPGLCTHILFAF-GWMNADYTVRAYDPADLPNDWAG 51


>AL031621-5|CAA20930.1|  437|Caenorhabditis elegans Hypothetical
           protein F28H6.3 protein.
          Length = 437

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 135 YRPGVGRYGIEDIPVDLCTH--LIYSFIGGTEKSSEVLIIDPELD 263
           Y  GV     +DI + +  +  L YSF+G   K  EV+II+P  D
Sbjct: 87  YFYGVNVNATDDILITVGAYNALYYSFLGWISKGDEVIIIEPAFD 131


>Z69793-6|CAI46593.1|  424|Caenorhabditis elegans Hypothetical
           protein R03A10.4b protein.
          Length = 424

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 LIYSFIGGTEKSSEVLIIDPELD 263
           L Y+F+G   K  EVLII+P  D
Sbjct: 109 LYYAFLGWVNKGDEVLIIEPAYD 131


>Z69793-5|CAA93673.2|  441|Caenorhabditis elegans Hypothetical
           protein R03A10.4a protein.
          Length = 441

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 LIYSFIGGTEKSSEVLIIDPELD 263
           L Y+F+G   K  EVLII+P  D
Sbjct: 126 LYYAFLGWVNKGDEVLIIEPAYD 148


>U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical
           protein K10B3.5 protein.
          Length = 609

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 21/89 (23%), Positives = 34/89 (38%)
 Frame = +3

Query: 18  PLKMRAIFATLAVLASCAALVQCADSRARIVCYFSNWAVYRPGVGRYGIEDIPVDLCTHL 197
           PL  RA+ +  + + + +A   C D  A I        +Y P V R  I  +P+      
Sbjct: 442 PLANRAVGSRQSGVTNASASKVCVDESASINDLLKQAYIYGPSVHRLPINSVPMYKVIRC 501

Query: 198 IYSFIGGTEKSSEVLIIDPELDVDKSGFR 284
                   E  +  L  +P +  D + FR
Sbjct: 502 YEPDFFSEEMQNRYLARNPPVAPDAAVFR 530


>AF101312-3|AAC69219.1|   83|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 27 protein.
          Length = 83

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 189 YTNPRGCLRCHNVRRRVGTPPNY*SNKRCALC 94
           +  P+  +RCH ++R V  P +Y  + +C+ C
Sbjct: 9   HPEPQREIRCHKLKRLVQHPNSYFMDVKCSGC 40


>U80453-11|AAN63452.2|  503|Caenorhabditis elegans Hypothetical
           protein C23H3.9a protein.
          Length = 503

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 102 ALCCPHTE--LMRRNSPGQPTSQISLAFSTVT 13
           ++CC  T   ++    P +PT ++ L +STVT
Sbjct: 124 SICCKDTRRGIVPNGRPARPTQRLPLTWSTVT 155


>U80453-10|AAN63453.1|  489|Caenorhabditis elegans Hypothetical
           protein C23H3.9b protein.
          Length = 489

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -3

Query: 102 ALCCPHTE--LMRRNSPGQPTSQISLAFSTVT 13
           ++CC  T   ++    P +PT ++ L +STVT
Sbjct: 120 SICCKDTRRGIVPNGRPARPTQRLPLTWSTVT 151


>U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical
           protein ZK1193.3 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 2   HGRTVTVENASDICDVGCPG-ELRRISSVCGQQS 100
           +G T T +NA  ICDVG  G     IS  C QQS
Sbjct: 42  NGGTTTPDNAGCICDVGYSGAHCEHIS--CLQQS 73


>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 198 SSGYTNPRGCLRC 160
           + GYTNP  CL C
Sbjct: 282 NGGYTNPSNCLEC 294


>Z49967-6|CAA90253.1|  341|Caenorhabditis elegans Hypothetical
           protein F54C9.7 protein.
          Length = 341

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = +2

Query: 14  VTVENASDICDVGCPGELRRISSVCGQQSAHR 109
           V VEN +DICD  C      I   C     HR
Sbjct: 28  VIVENDNDICDGMCHSNYSDIIKECQYGCNHR 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,072,627
Number of Sequences: 27780
Number of extensions: 159515
Number of successful extensions: 412
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)