Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1057
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g36370.1 68415.m04463 F-box family protein (FBL11) contains s...    27   3.1  
At1g30680.1 68414.m03751 toprim domain-containing protein contai...    27   4.1  
At2g44970.1 68415.m05598 lipase-related contains weak similarity...    25   9.5  

>At2g36370.1 68415.m04463 F-box family protein (FBL11) contains
           similarity to leucine-rich repeats containing F-box
           protein FBL3 GI:5919219 from [Homo sapiens]
          Length = 785

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  VTVENASDICDVGCPGELRRISSVC 88
           +T+E  SDICD+    ELR IS VC
Sbjct: 422 LTLEGRSDICDM----ELRSISRVC 442


>At1g30680.1 68414.m03751 toprim domain-containing protein contains
           Pfam profile: PF01751 toprim domain
          Length = 709

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
 Frame = +3

Query: 222 EKSSEVLIIDPELD---VDKSGFRNFTSLRSKHP 314
           EK+SEV+I++ E+D   ++++GF N  S+    P
Sbjct: 277 EKTSEVIIVEGEIDKLAMEEAGFLNCVSVPDGAP 310


>At2g44970.1 68415.m05598 lipase-related contains weak similarity to
           lipase [Pseudomonas aeruginosa] gi|3550950|gb|AAC34733.
          Length = 503

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 164 DAITSDAGSVHRPITEVTNDARSAVRTLN 78
           +A TSDA S  R  TE+   A +A+ T N
Sbjct: 118 EASTSDANSPSRESTEILPQATNAIVTSN 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,412
Number of Sequences: 28952
Number of extensions: 145875
Number of successful extensions: 366
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 390583752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)