Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1056
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   0.62 
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   1.9  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    26   1.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   2.5  
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    25   5.8  
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha...    24   7.7  

>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 0.62
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 98  FSRGCLRRWLCSFFTYTGTGWKCSNLID 15
           FS+G ++  +   FTY+G G KC  ++D
Sbjct: 139 FSKGLMKS-MTHLFTYSGMGAKCKKVLD 165


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 285 SVFQTSMLQTLFQTAVFKASVLKTS--RSNMVFNVVS 181
           SV   S+LQTLFQT +  A++      R  M FN+++
Sbjct: 46  SVKTNSLLQTLFQTPLPNANIWSNQAIRILMAFNILA 82


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 247 DRRVQSFRAQDQQKQYGVQCCVCRPRGQVHR 155
           +R+ ++FR +D+    G++C V R +   HR
Sbjct: 381 ERKEKAFRKKDEDSAAGLRCLVFRIKYLAHR 411


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 40  PVPVYVKKEHSHLLKHPLEKGKSEQNLKL 126
           P P+ +KK +S LLK     G   QN KL
Sbjct: 269 PEPLTIKKVYSTLLKIADSNGNGAQNRKL 297


>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 58  KKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHN 189
           KKE   LL   L +      + +  PETE++   G +LE+ + N
Sbjct: 117 KKEEKELLSTQLIRFLDTDTILIYSPETEYE---GKLLEEQKEN 157


>SPBC20F10.06 |mad2||spindle checkpoint protein
           Mad2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 203

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -3

Query: 315 SLLETTMLIASVFQTSMLQTLFQTAVFKASVLKTSRSNMVFNVVSVVLEDKS 160
           SL  ++ L++  F+ ++   LFQ  ++ A   K  R   +  +VSV  E K+
Sbjct: 11  SLKGSSKLVSEFFEYAVNSILFQRGIYPAEDFKVVRKYGLNMLVSVDEEVKT 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,297,813
Number of Sequences: 5004
Number of extensions: 22208
Number of successful extensions: 54
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)