Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1056
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    29   1.0  
01_06_1282 + 35972234-35972244,35972451-35972522,35972714-359727...    29   1.8  
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79...    28   3.2  
10_08_0187 + 15592130-15592512,15592597-15592972                       27   5.6  
03_06_0472 - 34172741-34172755,34172858-34172896,34173218-341733...    27   7.3  
03_06_0159 - 32059984-32060694                                         27   7.3  
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    26   9.7  
06_01_0789 - 5901888-5902940,5903685-5903824,5904606-5904665,590...    26   9.7  
01_06_1246 - 35703119-35703811,35704033-35704074,35704355-357045...    26   9.7  
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349...    26   9.7  

>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/40 (37%), Positives = 15/40 (37%)
 Frame = -1

Query: 185 CLSSSRTSPPPCLCSVSG*ISLRFCSDFPFSRGCLRRWLC 66
           C        PP L  V          DF FSRG LR W C
Sbjct: 92  CTHEVDLDKPPVLQEVENFFKGHGVGDFTFSRGRLREWRC 131


>01_06_1282 +
           35972234-35972244,35972451-35972522,35972714-35972747,
           35973247-35973360,35974833-35975036,35975290-35975449,
           35976093-35976240,35976345-35976422,35976854-35976938,
           35977142-35977213
          Length = 325

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 73  HLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGLE 222
           +LL++ + +  + +NL LI    +    GG+VLE D   I   ++  GLE
Sbjct: 245 YLLRNKVHRRAALENLDLIFLCLDEVVDGGIVLETDAKAILEKVSGHGLE 294


>08_01_0107 -
           789217-789984,790070-790219,790303-790890,790968-791093
          Length = 543

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 16/62 (25%), Positives = 24/62 (38%)
 Frame = +1

Query: 31  HFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 210
           H    P++    HS +   P  K +    ++   P  E   GGG       H+  HH +S
Sbjct: 370 HASSSPMHRAHHHSPVTPSP-SKARPPIQVRSASPRVERGGGGGGSYTPSLHSHRHHASS 428

Query: 211 AG 216
            G
Sbjct: 429 GG 430


>10_08_0187 + 15592130-15592512,15592597-15592972
          Length = 252

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +1

Query: 58  KKEHSHLLKHPLEK------GKSEQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIASAGL 219
           K+ HS ++  P  K       K+E +  +   E    HG  L   DD  + E H    GL
Sbjct: 177 KRSHSSIVDPPQPKEDPAAAAKAEDDDGVEEEEESKNHGANLRCNDDDDDEEFHY-YGGL 235

Query: 220 EHG 228
           +HG
Sbjct: 236 QHG 238


>03_06_0472 -
           34172741-34172755,34172858-34172896,34173218-34173309,
           34173633-34173708,34174273-34174668
          Length = 205

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 75  PSQAPS*KGKIRAKPQADSPRD*TQARRWTCPRGRQTQH 191
           P   P   G I A P    P +     R  C RG+Q QH
Sbjct: 30  PMVRPHKGGAIAASPLCQVPGEPRTVHRQDCRRGQQHQH 68


>03_06_0159 - 32059984-32060694
          Length = 236

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 206 AIWCSMLCLSSSRTSPPPCLCSVSG 132
           A+  S + LSS+ TSPPP    ++G
Sbjct: 58  ALALSSVLLSSAATSPPPAAADIAG 82


>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -3

Query: 198  VFNVVSVVLEDKSTAVLVFSLWVNQLEVLL*FSLFK 91
            + N++ V L+DK   +++  +W  Q  + + F+LF+
Sbjct: 1325 LINILRVFLKDKRYLIVIDDIWSTQEWMTIKFALFE 1360


>06_01_0789 -
           5901888-5902940,5903685-5903824,5904606-5904665,
           5904794-5904854
          Length = 437

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 19  IKFEHFHPVPVYVKKEHSHLLKHPLEKGKSEQNLKLIHPETEHKHGGGLVL-EDDRHNIE 195
           +K +H H   V   KEH H+     E G   +N  L+  +        LV   DD  +  
Sbjct: 216 VKAKHDHEAGVSKSKEHDHVCYKCHEFGHIRRNCPLL--KKRRSASASLVAHSDDSESSS 273

Query: 196 HHIASAGLE 222
           H I +   E
Sbjct: 274 HEILTVSNE 282


>01_06_1246 -
           35703119-35703811,35704033-35704074,35704355-35704576,
           35705077-35705466,35705560-35705637
          Length = 474

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 54  REEGAQPPSQAPS*KGKIRAKPQADS 131
           R+  + PPS+ PS  GKIR     DS
Sbjct: 327 RQSPSTPPSRVPSVTGKIRPASPRDS 352


>01_01_0474 -
           3488739-3488876,3488996-3489118,3489878-3489991,
           3490416-3490452,3490584-3490675,3490878-3490956,
           3491640-3491734,3491858-3491991,3492560-3492833,
           3493743-3494015,3494976-3495512
          Length = 631

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 88  PLEKGKSEQNLKLIHPETEHKHGGGLVLE 174
           P+  G  +Q L L+  E E+K GGGL+ E
Sbjct: 281 PMASGP-DQRLFLVGDEQEYKVGGGLISE 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,251,797
Number of Sequences: 37544
Number of extensions: 178465
Number of successful extensions: 422
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)