Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1056
(401 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr... 33 0.10
Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical pr... 27 3.8
EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient rec... 27 3.8
U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical pr... 27 6.7
Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical pr... 27 6.7
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 27 6.7
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 26 8.8
U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protei... 26 8.8
U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protei... 26 8.8
AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E prot... 26 8.8
AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E prot... 26 8.8
>Z78543-5|CAH10796.1| 1453|Caenorhabditis elegans Hypothetical
protein F29G6.3c protein.
Length = 1453
Score = 32.7 bits (71), Expect = 0.10
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 4 KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 171
KS + H+ P P VK + + +H PLEK +LK++HPE +
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772
Query: 172 EDDRH--NIEHHIASA 213
ED + N EHH A
Sbjct: 773 EDHQQKVNHEHHFIPA 788
>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical
protein F29G6.3b protein.
Length = 1785
Score = 32.7 bits (71), Expect = 0.10
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 4 KSHQSIKFEHFHP-VPVYVKKEHSHLLKH---PLEKGKSEQNLKLIHPETEHKHGGGLVL 171
KS + H+ P P VK + + +H PLEK +LK++HPE +
Sbjct: 713 KSRSVERAHHYLPDSPANVKDQRKIIREHHYVPLEKRSQSLDLKVVHPEHHYVPLVRKTT 772
Query: 172 EDDRH--NIEHHIASA 213
ED + N EHH A
Sbjct: 773 EDHQQKVNHEHHFIPA 788
>Z72504-1|CAA96603.2| 1193|Caenorhabditis elegans Hypothetical
protein C29E6.2 protein.
Length = 1193
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 34 FHPVPVYVKKEHSHLLKHPLEK 99
+HP+ + E HLL HPL K
Sbjct: 760 YHPLKLMADAEKLHLLNHPLSK 781
>EF535106-1|ABQ15208.1| 1206|Caenorhabditis elegans transient
receptor potential subfamilyA-1 protein.
Length = 1206
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 34 FHPVPVYVKKEHSHLLKHPLEK 99
+HP+ + E HLL HPL K
Sbjct: 773 YHPLKLMADAEKLHLLNHPLSK 794
>U80446-6|AAB37805.2| 783|Caenorhabditis elegans Hypothetical
protein F56A3.1 protein.
Length = 783
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -3
Query: 237 FKASVLKTSRSNMVFNVVSVVLEDKSTAVLVFSLWVNQLE 118
F+ SVL TS SN S+ + L S W+ Q E
Sbjct: 272 FRCSVLTTSTSNASRRTASITKRQQMITNLQLSDWIEQTE 311
>Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical
protein F33H2.1 protein.
Length = 983
Score = 26.6 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 102 SLFKRVLEKVAVLLLHVHRNGVEVFELDRLV 10
S K EK L H+ RNG VF+++++V
Sbjct: 308 SAMKPRFEKALPLRDHLERNGTVVFDMEKIV 338
>Z81475-8|CAL90887.1| 676|Caenorhabditis elegans Hypothetical
protein C24H11.8b protein.
Length = 676
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 82 KHPLEKGKSEQNLKLIHPETEHKH 153
K + G S+QN + IHP H H
Sbjct: 650 KRTISSGSSKQNEEYIHPRKYHHH 673
>Z81475-7|CAB03914.2| 653|Caenorhabditis elegans Hypothetical
protein C24H11.8a protein.
Length = 653
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 82 KHPLEKGKSEQNLKLIHPETEHKH 153
K + G S+QN + IHP H H
Sbjct: 627 KRTISSGSSKQNEEYIHPRKYHHH 650
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 26.6 bits (56), Expect = 6.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 185 CLSSSRTSPPPCLCSV 138
CL ++ +PPPC C+V
Sbjct: 55 CLKINQLAPPPCACNV 70
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +1
Query: 79 LKHPLEKGK-SEQNLKLIHPETEHKHG 156
+K P +K K SE+++K IHPE E +HG
Sbjct: 1 MKIPGDKRKISEKSIK-IHPEREKQHG 26
>U97194-4|AAP13781.1| 521|Caenorhabditis elegans Cyclin e protein
1, isoform b protein.
Length = 521
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 10 HQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE--QNLKL--IHPE 138
H+SIK + H + VYVK+ P+ K + E Q+LK +HP+
Sbjct: 476 HESIKSDDSHNIQVYVKRSS----MEPIVKSERERIQHLKARRLHPQ 518
>U97194-3|AAK68235.1| 524|Caenorhabditis elegans Cyclin e protein
1, isoform a protein.
Length = 524
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 10 HQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE--QNLKL--IHPE 138
H+SIK + H + VYVK+ P+ K + E Q+LK +HP+
Sbjct: 479 HESIKSDDSHNIQVYVKRSS----MEPIVKSERERIQHLKARRLHPQ 521
>AF520616-1|AAM78547.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 10 HQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE--QNLKL--IHPE 138
H+SIK + H + VYVK+ P+ K + E Q+LK +HP+
Sbjct: 479 HESIKSDDSHNIQVYVKRSS----MEPIVKSERERIQHLKARRLHPQ 521
>AF058331-1|AAC63505.1| 524|Caenorhabditis elegans cyclin E
protein.
Length = 524
Score = 26.2 bits (55), Expect = 8.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Frame = +1
Query: 10 HQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE--QNLKL--IHPE 138
H+SIK + H + VYVK+ P+ K + E Q+LK +HP+
Sbjct: 479 HESIKSDDSHNIQVYVKRSS----MEPIVKSERERIQHLKARRLHPQ 521
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.311 0.133 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,351,211
Number of Sequences: 27780
Number of extensions: 135902
Number of successful extensions: 366
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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