Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1056
         (401 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   4.0  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   9.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +1

Query: 4   KSHQSIKFEHFHPVPVYVKKEHSHLLKHPLEKGKSE 111
           + ++ +K +      +Y+K  H+H  K  LE+ K++
Sbjct: 51  QEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTK 86


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
          factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +1

Query: 19 IKFEHFHPVPVYVKKE 66
          I ++H+H  PV+ K++
Sbjct: 6  IHYQHYHITPVFTKQK 21


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +1

Query: 109 EQNLKLIHPETEHKHGGGLVLEDDRHNIEHHIAS 210
           EQNL L      +  GG  +     H   HH+ S
Sbjct: 136 EQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMDS 169


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 103 KSEQNLKLIHPETEHKHGGGLV 168
           KSE N +L    T++   GGL+
Sbjct: 191 KSENNTELSRVGTKYHRSGGLM 212


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 182 LSSSRTSPPP 153
           + S RTSPPP
Sbjct: 409 IGSRRTSPPP 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.133    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,568
Number of Sequences: 438
Number of extensions: 1477
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)