Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1054
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    30   0.32 
SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    30   0.32 
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   6.9  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   9.1  

>SPAC212.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 DLELSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 251
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPBCPT2R1.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 132 DLELSVNASNLEKFQLKIAQHELYEDGEILVEAILKDMAT 251
           D  L  N++N    +L I  HELY DGEI    +L+ + T
Sbjct: 11  DNPLISNSTNNVTHELLIDLHELYNDGEISRIVLLRTLVT 50


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/47 (23%), Positives = 24/47 (51%)
 Frame = -3

Query: 467 HCPPEAEYPVEMKSCYFSIVPFVIREIEVVRQRLDITGESHWFKECL 327
           HC P +  P+         + ++ +EIE++++  ++  E+ W  E L
Sbjct: 245 HCNPNSMTPLISMITIEERIQYLQKEIELIQELHEMEPENRWCCESL 291


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 228 LRPKSLHPRIVHAERSSAETSRD*MR 151
           +R  SLHP++    R S +TSR   R
Sbjct: 872 IRNDSLHPKVGPPRRQSTDTSRSTFR 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,091
Number of Sequences: 5004
Number of extensions: 46288
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)