Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1054
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0590 + 34932012-34932641                                         30   1.3  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   4.1  

>03_06_0590 + 34932012-34932641
          Length = 209

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 509 IDLGGHVEYAAHDRHCPPEAEYPVEMKSCYFSIVPFVIREIEVVR 375
           +DL G V+YA H   C  EA  P++++      V F     +++R
Sbjct: 159 VDLSGEVKYALHSAWCRVEARCPLKLQLAAAGSVAFQETTCDMLR 203


>04_04_1571 +
           34504087-34504421,34505002-34505731,34506091-34512077,
           34512493-34513964,34514114-34514377,34514761-34514978,
           34515759-34516030,34516190-34516559,34516578-34516797,
           34516819-34518931,34518941-34519193,34519269-34519401,
           34520597-34521114,34521207-34522115,34522195-34522368,
           34522833-34522882,34523963-34524035,34524413-34524477,
           34524736-34525522,34525622-34525878,34525989-34526109,
           34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 198 LYEDG-EILVEAILKDMATLPVLHAEQKEGGT 290
           LYE+   ILVE I K + T PV H+E K GGT
Sbjct: 447 LYEEPWSILVEQICKFIYTSPVFHSEIK-GGT 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,694
Number of Sequences: 37544
Number of extensions: 330140
Number of successful extensions: 801
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)